Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_I08
         (1436 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.019
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    34   0.042
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    23   3.4  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.8  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    23   7.2  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.7 bits (66), Expect = 0.52
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = -2

Query: 553 PPPPPPXXXFFXXXKTXXPPPPPPXP 476
           PPPPPP            PPPPPP P
Sbjct: 761 PPPPPPPP---GVAGAGPPPPPPPPP 783



 Score = 27.5 bits (58), Expect(2) = 0.019
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = -2

Query: 559 KXPPPPPPXXXFFXXXKTXXPPPPP 485
           K PPPPPP            P PPP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPP 754



 Score = 26.6 bits (56), Expect(2) = 0.019
 Identities = 15/36 (41%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
 Frame = -2

Query: 373 PPXFXXXXPXPXXXXPXX-GPXPPPPQXXPPPPXXS 269
           PP      P P    P   G  PPPP   PPPP  S
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPP--PPPPAVS 786



 Score = 23.8 bits (49), Expect(2) = 1.2
 Identities = 13/49 (26%), Positives = 13/49 (26%)
 Frame = -2

Query: 682 PPPXXGXPXXPPXXXXXXXXPXXXPPXXXXXXXXXXXGXXKKXPPPPPP 536
           PPP       P         P   P            G     PPPPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 23.8 bits (49), Expect(2) = 1.2
 Identities = 10/29 (34%), Positives = 10/29 (34%)
 Frame = -2

Query: 553 PPPPPPXXXFFXXXKTXXPPPPPPXPXKK 467
           PPPPPP             P P   P  K
Sbjct: 776 PPPPPPPPAVSAGGSRYYAPAPQAEPEPK 804


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 34.3 bits (75), Expect = 0.042
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = -2

Query: 553 PPPPPPXXXFFXXXKTXXPPPPPPXPXKK 467
           PPPPPP   F     +  PPPPPP   KK
Sbjct: 9   PPPPPPPPGF--EPPSQPPPPPPPGYVKK 35



 Score = 30.3 bits (65), Expect = 0.69
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = -2

Query: 550 PPPPPXXXFFXXXKTXXPPPPPPXPXKK 467
           PPPPP    F       PPPPP    K+
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPPGYVKKR 36


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 23.4 bits (48), Expect(2) = 3.4
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 500 PPPPPPXP 477
           PPPPPP P
Sbjct: 190 PPPPPPPP 197



 Score = 22.6 bits (46), Expect(2) = 3.4
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -1

Query: 509 NXXPPPPPP 483
           N  PPPPPP
Sbjct: 188 NPPPPPPPP 196


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 31/138 (22%), Positives = 34/138 (24%), Gaps = 7/138 (5%)
 Frame = -2

Query: 661 PXXPPXXXXXXXXPXXXPPXXXXXXXXXXXGXXKKXPPPPPPXXXFFXXXKTXXP--PPP 488
           P  PP        P   PP                 PP PPP               PPP
Sbjct: 254 PPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPP 313

Query: 487 PPXPXKKXXXFF*XXFXXXXXXXXXXXXXXXSQKXXFXPPXFXXXXPXPXXXXPXXGPXP 308
           PP P ++                        S      PP        P        P P
Sbjct: 314 PPPPSRRNRG----------KPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPP 363

Query: 307 PPPQXXP-----PPPXXS 269
           PPP+  P     PPP  S
Sbjct: 364 PPPRSAPSTGRQPPPLSS 381


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 23.4 bits (48), Expect(2) = 7.2
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -2

Query: 499 PPPPPPXP 476
           PPPPPP P
Sbjct: 946 PPPPPPPP 953



 Score = 21.4 bits (43), Expect(2) = 7.2
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -2

Query: 571 GXXKKXPPPPPP 536
           G     PPPPPP
Sbjct: 939 GVMPAFPPPPPP 950


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.162    0.560 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,824,556
Number of Sequences: 5004
Number of extensions: 23592
Number of successful extensions: 227
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 800832734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)