Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_I06
(1311 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.27
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 31 0.35
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.35
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 30 0.62
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 30 0.62
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 30 0.62
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 29 1.1
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 5.7
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 27 5.7
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula... 27 7.6
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.5 bits (68), Expect = 0.27
Identities = 15/39 (38%), Positives = 16/39 (41%)
Frame = -2
Query: 503 PXPPPXFFFXLXXXXPPPPPXXXXXKXPPPXSPXSPPXS 387
P PPP + PPPPP PPP P P S
Sbjct: 750 PVPPPAPI--MGGPPPPPPPPGVAGAGPPPPPPPPPAVS 786
Score = 30.3 bits (65), Expect = 0.62
Identities = 18/51 (35%), Positives = 18/51 (35%), Gaps = 7/51 (13%)
Frame = -2
Query: 512 KSXPXPPPXFFFXLXXXXP---PPPPXXXXXKXPPPXSP----XSPPXSPP 381
KS P PPP P PPP PPP P PP PP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 28.3 bits (60), Expect = 2.5
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = -3
Query: 457 PPPPPX*XXKKXPRXXPXXPPPXPPPXP 374
PPPPP P PPP PPP P
Sbjct: 761 PPPPPP-----PPGVAGAGPPPPPPPPP 783
>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 31.1 bits (67), Expect = 0.35
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = +1
Query: 94 FFFFFXFXXFFFFXFFXXFLMIXFFFLAC 180
F FFF F F FF F L FFF C
Sbjct: 108 FCFFFYFSLFSFFSFLFTSLHFNFFFRLC 136
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.1 bits (67), Expect = 0.35
Identities = 17/48 (35%), Positives = 17/48 (35%)
Frame = -2
Query: 524 GVSXKSXPXPPPXFFFXLXXXXPPPPPXXXXXKXPPPXSPXSPPXSPP 381
G S S P PPP P PP PPP S S PP
Sbjct: 330 GSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPP 377
Score = 28.3 bits (60), Expect = 2.5
Identities = 11/28 (39%), Positives = 12/28 (42%)
Frame = -3
Query: 457 PPPPPX*XXKKXPRXXPXXPPPXPPPXP 374
PP PP + P P P PPP P
Sbjct: 230 PPIPPSIPSSRPPERVPSLSAPAPPPIP 257
Score = 27.1 bits (57), Expect = 5.7
Identities = 14/44 (31%), Positives = 15/44 (34%)
Frame = -2
Query: 512 KSXPXPPPXFFFXLXXXXPPPPPXXXXXKXPPPXSPXSPPXSPP 381
+S P PPP PPP PP P P S P
Sbjct: 358 RSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAP 401
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 30.3 bits (65), Expect = 0.62
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = -2
Query: 458 PPPPPXXXXXKXPPPXSPXSPPXSPP 381
PPPPP P P PP +PP
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPP 1732
Score = 27.5 bits (58), Expect = 4.3
Identities = 15/51 (29%), Positives = 20/51 (39%)
Frame = -2
Query: 530 FGGVSXKSXPXPPPXFFFXLXXXXPPPPPXXXXXKXPPPXSPXSPPXSPPL 378
FGG++ PP + PP PPP S PP +PP+
Sbjct: 1678 FGGMAPAHPVSTPP-----VRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPM 1723
Score = 27.1 bits (57), Expect = 5.7
Identities = 14/42 (33%), Positives = 14/42 (33%)
Frame = -2
Query: 509 SXPXPPPXFFFXLXXXXPPPPPXXXXXKXPPPXSPXSPPXSP 384
S P PPP PP P PPP S P P
Sbjct: 1703 SAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 30.3 bits (65), Expect = 0.62
Identities = 17/34 (50%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = +2
Query: 359 GG*GXGXGGGXGG-GXXGXXAGAFFXXLXGGGGG 457
GG G G GG GG G G G F L G GGG
Sbjct: 224 GGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGG 257
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 30.3 bits (65), Expect = 0.62
Identities = 13/28 (46%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = -2
Query: 458 PPPPPXXXXXKXPPPXSPXS--PPXSPP 381
PPPPP PP +P S PP PP
Sbjct: 1883 PPPPPMALPKAGPPSAAPTSALPPAGPP 1910
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 29.5 bits (63), Expect = 1.1
Identities = 15/33 (45%), Positives = 15/33 (45%)
Frame = +2
Query: 359 GG*GXGXGGGXGGGXXGXXAGAFFXXLXGGGGG 457
GG G G GG GGG G G F GG G
Sbjct: 160 GGFGGGSRGGFGGGSRGGSRGGFRGGSRGGFRG 192
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.1 bits (57), Expect = 5.7
Identities = 18/63 (28%), Positives = 20/63 (31%)
Frame = -2
Query: 569 PXPPXXXXFFFXXFGGVSXKSXPXPPPXFFFXLXXXXPPPPPXXXXXKXPPPXSPXSPPX 390
P PP S P P P + PP P PPP P +P
Sbjct: 128 PAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPS-----SLPPPAQPAAPVK 182
Query: 389 SPP 381
SPP
Sbjct: 183 SPP 185
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 27.1 bits (57), Expect = 5.7
Identities = 15/42 (35%), Positives = 15/42 (35%)
Frame = +1
Query: 379 RGGXXGGEXGXXGGGXFXLXXXGGGGGXXXXXXKKKXGGGXG 504
RGG GG G GGG GG G GG G
Sbjct: 25 RGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGG 66
Score = 26.6 bits (56), Expect = 7.6
Identities = 15/34 (44%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Frame = +2
Query: 359 GG*GXGXGGGXGGGXXGXXAG-AFFXXLXGGGGG 457
GG G G GG GGG G G GG GG
Sbjct: 26 GGFGGGRGGARGGGRGGARGGRGGRGGARGGRGG 59
>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
Prp45|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 26.6 bits (56), Expect = 7.6
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -3
Query: 457 PPPPPX*XXKKXPRXXPXXPPP 392
P PP KK PR P PPP
Sbjct: 211 PMEPPKFRHKKVPRGPPSPPPP 232
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.152 0.499
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,330,265
Number of Sequences: 5004
Number of extensions: 33434
Number of successful extensions: 203
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 717371258
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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