Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_I05
(1248 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer... 58 3e-09
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy... 47 6e-06
SPAC3A11.03 |||methyltransferase |Schizosaccharomyces pombe|chr ... 30 0.58
SPCC162.05 |coq3||hexaprenyldihydroxybenzoate methyltransferase|... 29 1.8
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ... 28 2.4
SPAC23D3.02 |rfc2||DNA replication factor C complex subunit Rfc2... 27 4.1
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz... 27 5.4
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|... 27 7.2
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr... 26 9.5
SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces p... 26 9.5
>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 339
Score = 58.0 bits (134), Expect = 3e-09
Identities = 45/165 (27%), Positives = 78/165 (47%)
Frame = +2
Query: 245 EDYDYHQEIARSAFADMLHDTERNQKYSKALKLAIEKMHNDGKKANVLDIGTGTGLLSIM 424
+DY + +ML D R Y A+ ++ H K VLD+G GTG+LS+
Sbjct: 16 KDYYFDSYSHWGIHEEMLKDDVRTLSYRDAI---MQNPHLFRDKI-VLDVGCGTGILSMF 71
Query: 425 AAKSGADTIVACEAFQPMAECCLRILECNGVADKVTVIPKRSTELTVGENGDMKQKANIL 604
A++GA + + + ++I+E N ++D++T+I + E+ + +K +I+
Sbjct: 72 CARAGAKHVYGVD-MSEIIHKAVQIVEVNKLSDRITLIQGKMEEIQL-----PVEKVDII 125
Query: 605 VTEVFDTELIGEGALSTFSHAHKFLLEEDAIVVPDSAVIYAQVVE 739
V+E L+ E L T A L D ++ PD A I +E
Sbjct: 126 VSEWMGYFLLYESMLDTVLVARDRYLAPDGLLFPDRAQIQLAAIE 170
>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 543
Score = 46.8 bits (106), Expect = 6e-06
Identities = 42/176 (23%), Positives = 71/176 (40%)
Frame = +2
Query: 179 KMKVFTQKRNPLTGCTEWDMQDEDYDYHQEIARSAFADMLHDTERNQKYSKALKLAIEKM 358
KM T + T ++ Y + ML+D+ R + Y
Sbjct: 195 KMNELTSQTTDQLSVTPKKADNDSYYFESYAGNDIHFLMLNDSVRTEGYRD---FVYHNK 251
Query: 359 HNDGKKANVLDIGTGTGLLSIMAAKSGADTIVACEAFQPMAECCLRILECNGVADKVTVI 538
H K VLD+G GTG+LS+ AK+GA + A + + E NG+AD++T I
Sbjct: 252 HIFAGKT-VLDVGCGTGILSMFCAKAGAKKVYAVDNSDIIQMAISNAFE-NGLADQITFI 309
Query: 539 PKRSTELTVGENGDMKQKANILVTEVFDTELIGEGALSTFSHAHKFLLEEDAIVVP 706
+ ++++ K +I+++E L E + + A L I+ P
Sbjct: 310 RGKIEDISLPVG-----KVDIIISEWMGYALTFESMIDSVLVARDRFLAPSGIMAP 360
>SPAC3A11.03 |||methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 247
Score = 30.3 bits (65), Expect = 0.58
Identities = 12/20 (60%), Positives = 17/20 (85%)
Frame = +2
Query: 383 VLDIGTGTGLLSIMAAKSGA 442
VL++G GTGL+SI+ AK G+
Sbjct: 174 VLELGAGTGLVSILCAKMGS 193
>SPCC162.05 |coq3||hexaprenyldihydroxybenzoate
methyltransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 271
Score = 28.7 bits (61), Expect = 1.8
Identities = 19/38 (50%), Positives = 25/38 (65%)
Frame = +2
Query: 368 GKKANVLDIGTGTGLLSIMAAKSGADTIVACEAFQPMA 481
GKK +LDIG G G+LS A+ GA ++ A +A PMA
Sbjct: 78 GKK--ILDIGCGGGILSESMARLGA-SVTAVDA-SPMA 111
>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 817
Score = 28.3 bits (60), Expect = 2.4
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -3
Query: 535 NSYLISHTIAFQYPETAFSHRLKSLTSNNSV 443
NS ++ + Q E FSH++K LTS N +
Sbjct: 290 NSLIMEYKNELQSAEEHFSHKIKELTSENEL 320
>SPAC23D3.02 |rfc2||DNA replication factor C complex subunit
Rfc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 27.5 bits (58), Expect = 4.1
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Frame = +2
Query: 578 DMKQKANILVTEVFDTELIGEGALS--TFSHAHKFLLEEDAIVVPDSAVIYAQVVECPIL 751
D N+ E ++ EG + S H LL+E+ + P I+ ++ E
Sbjct: 259 DTAYTKNVSNIETLSRDVAAEGYSTGIILSQLHDVLLKEETLSSPVKYKIFMKLSEVD-- 316
Query: 752 QKWNKLNDLADEDLQII 802
+LND ADE LQ++
Sbjct: 317 ---KRLNDGADETLQLL 330
>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
Utp5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 666
Score = 27.1 bits (57), Expect = 5.4
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -3
Query: 490 TAFSHRLKSLTSNNSVST*FCCHYGEEPCTCANI 389
++ SHR K LTS++++ FC G+ P +I
Sbjct: 307 SSLSHRRKLLTSHSTLKICFCRSRGDPPIVLESI 340
>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 503
Score = 26.6 bits (56), Expect = 7.2
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 173 GSKMKVFTQKRNPLTGCTEWDMQDEDYDYHQEIARSAF 286
G ++KV++ L C D +ED D ++AR+AF
Sbjct: 37 GGRVKVYSPSTEKLI-CEVADADEEDVDIAVKVARAAF 73
>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 359
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 74 SACKYMNTIYKVTFFNYLLASSHKRFK 154
+A KY+N I + F NY L +S K K
Sbjct: 290 NASKYLNAISDIPFLNYELITSTKLAK 316
>SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 303
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 335 LKLAIEKMHNDGKKANVLDIGTGTGLLSIMAA 430
L + K + N L++G GTGL+ I AA
Sbjct: 123 LSANLPKWEDLSNSINALELGAGTGLVGISAA 154
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,325,850
Number of Sequences: 5004
Number of extensions: 86899
Number of successful extensions: 274
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 679334062
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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