Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_I03
(1310 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 34 0.26
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 34 0.26
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 33 0.45
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 33 0.45
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 33 0.45
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 32 0.78
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 32 0.78
AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical... 32 0.78
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 32 0.78
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 32 0.78
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 32 0.78
AF047659-10|AAC04430.1| 798|Caenorhabditis elegans Hypothetical... 31 1.4
AF098501-3|AAM69106.1| 275|Caenorhabditis elegans Hypothetical ... 30 3.1
AF098501-2|AAM69105.1| 298|Caenorhabditis elegans Hypothetical ... 30 3.1
AF098501-1|AAC67404.2| 548|Caenorhabditis elegans Hypothetical ... 30 3.1
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 30 4.2
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 30 4.2
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 30 4.2
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 29 5.5
Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical pr... 29 7.3
Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical pr... 29 7.3
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 29 7.3
AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical... 29 7.3
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 29 7.3
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 33.9 bits (74), Expect = 0.26
Identities = 17/40 (42%), Positives = 17/40 (42%)
Frame = +3
Query: 420 GXXXGNXGXGGGXDXXXXGGRKKRPPPAXSXX*XGXGGGG 539
G G G GGG GG PPPA G GGGG
Sbjct: 26 GGGGGGGGCGGGCGGGCGGGGGCAPPPAPCGGGCGGGGGG 65
Score = 28.7 bits (61), Expect = 9.6
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +2
Query: 1019 GGGXXXGGGXXPPPXXXGG 1075
GGG GGG PPP GG
Sbjct: 39 GGGCGGGGGCAPPPAPCGG 57
Score = 28.7 bits (61), Expect = 9.6
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +2
Query: 1019 GGGXXXGGGXXPPPXXXGG 1075
GGG GGG PPP GG
Sbjct: 63 GGGCGGGGGCAPPPAPCGG 81
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 33.9 bits (74), Expect = 0.26
Identities = 17/40 (42%), Positives = 17/40 (42%)
Frame = +3
Query: 420 GXXXGNXGXGGGXDXXXXGGRKKRPPPAXSXX*XGXGGGG 539
G G G GGG GG PPPA G GGGG
Sbjct: 26 GGGGGGGGCGGGCGGGCGGGGGCAPPPAPCGGGCGGGGGG 65
Score = 28.7 bits (61), Expect = 9.6
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +2
Query: 1019 GGGXXXGGGXXPPPXXXGG 1075
GGG GGG PPP GG
Sbjct: 39 GGGCGGGGGCAPPPAPCGG 57
Score = 28.7 bits (61), Expect = 9.6
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = +2
Query: 1019 GGGXXXGGGXXPPPXXXGG 1075
GGG GGG PPP GG
Sbjct: 63 GGGCGGGGGCAPPPAPCGG 81
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 33.1 bits (72), Expect = 0.45
Identities = 25/83 (30%), Positives = 26/83 (31%), Gaps = 5/83 (6%)
Frame = -2
Query: 604 LPPXWX-PPXXRPXSXFXXXIIXPPPPXPXYXXX*AGGGRFFLPPXXXXSXPPPXPXXP- 431
LPP PP P PPPP P GG PP PPP P P
Sbjct: 719 LPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPG 778
Query: 430 ---XXXPPXSPXFLGXXXXPXXP 371
PP P + P P
Sbjct: 779 GFKGGPPPPPPPGMFAPMAPVIP 801
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 33.1 bits (72), Expect = 0.45
Identities = 25/83 (30%), Positives = 26/83 (31%), Gaps = 5/83 (6%)
Frame = -2
Query: 604 LPPXWX-PPXXRPXSXFXXXIIXPPPPXPXYXXX*AGGGRFFLPPXXXXSXPPPXPXXP- 431
LPP PP P PPPP P GG PP PPP P P
Sbjct: 719 LPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPG 778
Query: 430 ---XXXPPXSPXFLGXXXXPXXP 371
PP P + P P
Sbjct: 779 GFKGGPPPPPPPGMFAPMAPVIP 801
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 33.1 bits (72), Expect = 0.45
Identities = 25/83 (30%), Positives = 26/83 (31%), Gaps = 5/83 (6%)
Frame = -2
Query: 604 LPPXWX-PPXXRPXSXFXXXIIXPPPPXPXYXXX*AGGGRFFLPPXXXXSXPPPXPXXP- 431
LPP PP P PPPP P GG PP PPP P P
Sbjct: 302 LPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPG 361
Query: 430 ---XXXPPXSPXFLGXXXXPXXP 371
PP P + P P
Sbjct: 362 GFKGGPPPPPPPGMFAPMAPVIP 384
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 32.3 bits (70), Expect = 0.78
Identities = 17/44 (38%), Positives = 17/44 (38%)
Frame = +3
Query: 408 GXXGGXXXGNXGXGGGXDXXXXGGRKKRPPPAXSXX*XGXGGGG 539
G GG G G GGG G PPP G GGGG
Sbjct: 26 GGGGGGCGGGCGGGGGCGGGGGCGGGCAPPPPPPACGGGCGGGG 69
Score = 32.3 bits (70), Expect = 0.78
Identities = 22/64 (34%), Positives = 22/64 (34%)
Frame = +3
Query: 408 GXXGGXXXGNXGXGGGXDXXXXGGRKKRPPPAXSXX*XGXGGGGXIXXXXKXEXGRXXGG 587
G GG G G GGG GG PPP G GGGG G GG
Sbjct: 30 GGCGGGCGGGGGCGGG--GGCGGGCAPPPPPPACGGGCGGGGGGCGGGGGGCGGGGGCGG 87
Query: 588 XQXG 599
G
Sbjct: 88 GGGG 91
Score = 31.5 bits (68), Expect = 1.4
Identities = 22/66 (33%), Positives = 23/66 (34%), Gaps = 1/66 (1%)
Frame = +3
Query: 408 GXXGGXXXGNXGXGGG-XDXXXXGGRKKRPPPAXSXX*XGXGGGGXIXXXXKXEXGRXXG 584
G GG G G GGG GG PPP + GGGG G G
Sbjct: 83 GGCGGGGGGCGGGGGGCGGGGGCGGGCAPPPPPPACGGGCGGGGGGCGGGCGGGGGGGCG 142
Query: 585 GXQXGG 602
G GG
Sbjct: 143 GGGGGG 148
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 32.3 bits (70), Expect = 0.78
Identities = 20/55 (36%), Positives = 21/55 (38%)
Frame = -2
Query: 535 PPPXPXYXXX*AGGGRFFLPPXXXXSXPPPXPXXPXXXPPXSPXFLGXXXXPXXP 371
PPP P + AGG PP PPP P PP P LG P P
Sbjct: 84 PPPPPMF----AGG--IPPPPPMMGGIPPPPPMFGAPPPPPPPSGLGVAPQPPRP 132
Score = 29.9 bits (64), Expect = 4.2
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = -2
Query: 487 FFLPPXXXXSXPPPXPXXPXXXPPXSPXFLGXXXXP 380
FF+PP PP P P PP P F G P
Sbjct: 63 FFIPPPVPNGFIPP-PPGPGGIPPPPPMFAGGIPPP 97
Score = 28.7 bits (61), Expect = 9.6
Identities = 19/57 (33%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
Frame = -2
Query: 535 PPPXPX-YXXX*AGGGRFFLPPXXXXSXPPPXPXXPXXXPPXSPXFLGXXXXPXXPS 368
PPP P + G G PP PP P PP P F G P PS
Sbjct: 66 PPPVPNGFIPPPPGPGGIPPPPPMFAGGIPPPPPMMGGIPPPPPMF-GAPPPPPPPS 121
>AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical
protein Y43F8C.20 protein.
Length = 193
Score = 32.3 bits (70), Expect = 0.78
Identities = 21/62 (33%), Positives = 24/62 (38%)
Frame = +3
Query: 417 GGXXXGNXGXGGGXDXXXXGGRKKRPPPAXSXX*XGXGGGGXIXXXXKXEXGRXXGGXQX 596
GG N G GGG GG + PP + G GGG GR GG +
Sbjct: 123 GGWGGNNGGGGGGRGGGGRGGDGRGPPGSNGGGDWGGNGGG----------GRGGGGGRG 172
Query: 597 GG 602
GG
Sbjct: 173 GG 174
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 32.3 bits (70), Expect = 0.78
Identities = 18/44 (40%), Positives = 18/44 (40%)
Frame = -2
Query: 538 PPPPXPXYXXX*AGGGRFFLPPXXXXSXPPPXPXXPXXXPPXSP 407
PPPP P AG G PP S PPP P P SP
Sbjct: 238 PPPPPPKGSPPLAGSGSP-PPPPAAGSPPPPRTGSPPPPPTGSP 280
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 32.3 bits (70), Expect = 0.78
Identities = 18/44 (40%), Positives = 18/44 (40%)
Frame = -2
Query: 538 PPPPXPXYXXX*AGGGRFFLPPXXXXSXPPPXPXXPXXXPPXSP 407
PPPP P AG G PP S PPP P P SP
Sbjct: 259 PPPPPPKGSPPLAGSGSP-PPPPAAGSPPPPRTGSPPPPPTGSP 301
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 32.3 bits (70), Expect = 0.78
Identities = 18/44 (40%), Positives = 18/44 (40%)
Frame = -2
Query: 538 PPPPXPXYXXX*AGGGRFFLPPXXXXSXPPPXPXXPXXXPPXSP 407
PPPP P AG G PP S PPP P P SP
Sbjct: 244 PPPPPPKGSPPLAGSGSP-PPPPAAGSPPPPRTGSPPPPPTGSP 286
>AF047659-10|AAC04430.1| 798|Caenorhabditis elegans Hypothetical
protein K07H8.10 protein.
Length = 798
Score = 31.5 bits (68), Expect = 1.4
Identities = 24/67 (35%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Frame = +1
Query: 343 GGKNXXXXERGVXXXXXXQEXGGXXGGXGXXXRXXG-GGXTPRXXAEGKSDPXPL-XRXN 516
GG +RGV GG GG R G GG TPR G +D P R N
Sbjct: 118 GGSPWRGGDRGVANRGRGDFSGGSRGGNKFSPRGGGRGGFTPR--GRGGNDFSPRGGRGN 175
Query: 517 XEGGGGG 537
+ GGG
Sbjct: 176 FQSRGGG 182
>AF098501-3|AAM69106.1| 275|Caenorhabditis elegans Hypothetical
protein H28G03.2c protein.
Length = 275
Score = 30.3 bits (65), Expect = 3.1
Identities = 19/62 (30%), Positives = 22/62 (35%), Gaps = 3/62 (4%)
Frame = -2
Query: 586 PPXXRPXSXFXXXIIXPPPPX---PXYXXX*AGGGRFFLPPXXXXSXPPPXPXXPXXXPP 416
PP P I PPPP P + G + +PP PPP P PP
Sbjct: 84 PPGMGPPPFMPPPIGMPPPPLGMPPPHIGL--GAAPYAVPPPMSLLGPPPFSVPPSVPPP 141
Query: 415 XS 410
S
Sbjct: 142 TS 143
>AF098501-2|AAM69105.1| 298|Caenorhabditis elegans Hypothetical
protein H28G03.2b protein.
Length = 298
Score = 30.3 bits (65), Expect = 3.1
Identities = 19/62 (30%), Positives = 22/62 (35%), Gaps = 3/62 (4%)
Frame = -2
Query: 586 PPXXRPXSXFXXXIIXPPPPX---PXYXXX*AGGGRFFLPPXXXXSXPPPXPXXPXXXPP 416
PP P I PPPP P + G + +PP PPP P PP
Sbjct: 107 PPGMGPPPFMPPPIGMPPPPLGMPPPHIGL--GAAPYAVPPPMSLLGPPPFSVPPSVPPP 164
Query: 415 XS 410
S
Sbjct: 165 TS 166
>AF098501-1|AAC67404.2| 548|Caenorhabditis elegans Hypothetical
protein H28G03.2a protein.
Length = 548
Score = 30.3 bits (65), Expect = 3.1
Identities = 19/62 (30%), Positives = 22/62 (35%), Gaps = 3/62 (4%)
Frame = -2
Query: 586 PPXXRPXSXFXXXIIXPPPPX---PXYXXX*AGGGRFFLPPXXXXSXPPPXPXXPXXXPP 416
PP P I PPPP P + G + +PP PPP P PP
Sbjct: 357 PPGMGPPPFMPPPIGMPPPPLGMPPPHIGL--GAAPYAVPPPMSLLGPPPFSVPPSVPPP 414
Query: 415 XS 410
S
Sbjct: 415 TS 416
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.9 bits (64), Expect = 4.2
Identities = 21/68 (30%), Positives = 24/68 (35%)
Frame = -2
Query: 610 GALPPXWXPPXXRPXSXFXXXIIXPPPPXPXYXXX*AGGGRFFLPPXXXXSXPPPXPXXP 431
G PP PP R + PPPP + GG +PP PPP P
Sbjct: 294 GMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGG----MPP-----PPPPGMRYP 344
Query: 430 XXXPPXSP 407
PP P
Sbjct: 345 GGMPPPPP 352
Score = 29.5 bits (63), Expect = 5.5
Identities = 19/57 (33%), Positives = 20/57 (35%)
Frame = -2
Query: 538 PPPPXPXYXXX*AGGGRFFLPPXXXXSXPPPXPXXPXXXPPXSPXFLGXXXXPXXPS 368
PPPP P GG PP + P P P PP P G P PS
Sbjct: 334 PPPPPPGMRYP--GGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPPPPPPS 388
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 29.9 bits (64), Expect = 4.2
Identities = 21/65 (32%), Positives = 21/65 (32%)
Frame = -2
Query: 601 PPXWXPPXXRPXSXFXXXIIXPPPPXPXYXXX*AGGGRFFLPPXXXXSXPPPXPXXPXXX 422
PP PP P PPPP P R P S PPP P P
Sbjct: 133 PPPPPPPHYPPPPPHYP----PPPPAPHSAYIDHSAPR---PAYIEHSAPPPQPQYPQQQ 185
Query: 421 PPXSP 407
PP P
Sbjct: 186 PPQYP 190
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.9 bits (64), Expect = 4.2
Identities = 21/68 (30%), Positives = 24/68 (35%)
Frame = -2
Query: 610 GALPPXWXPPXXRPXSXFXXXIIXPPPPXPXYXXX*AGGGRFFLPPXXXXSXPPPXPXXP 431
G PP PP R + PPPP + GG +PP PPP P
Sbjct: 304 GMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGG----MPP-----PPPPGMRYP 354
Query: 430 XXXPPXSP 407
PP P
Sbjct: 355 GGMPPPPP 362
Score = 29.5 bits (63), Expect = 5.5
Identities = 19/57 (33%), Positives = 20/57 (35%)
Frame = -2
Query: 538 PPPPXPXYXXX*AGGGRFFLPPXXXXSXPPPXPXXPXXXPPXSPXFLGXXXXPXXPS 368
PPPP P GG PP + P P P PP P G P PS
Sbjct: 344 PPPPPPGMRYP--GGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPPPPPPS 398
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 29.5 bits (63), Expect = 5.5
Identities = 20/69 (28%), Positives = 20/69 (28%)
Frame = -2
Query: 613 FGALPPXWXPPXXRPXSXFXXXIIXPPPPXPXYXXX*AGGGRFFLPPXXXXSXPPPXPXX 434
FG PP P P PP P F PP PPP P
Sbjct: 19 FGGCCSMGPPPCPPPPPPMCAPPPLPCPPPPICPPQ-------FCPPPPMCPPPPPPPPP 71
Query: 433 PXXXPPXSP 407
P PP P
Sbjct: 72 PMCPPPPPP 80
>Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical
protein R08B4.1b protein.
Length = 1160
Score = 29.1 bits (62), Expect = 7.3
Identities = 15/44 (34%), Positives = 15/44 (34%)
Frame = +3
Query: 408 GXXGGXXXGNXGXGGGXDXXXXGGRKKRPPPAXSXX*XGXGGGG 539
G GG G G GGG GG G GGGG
Sbjct: 792 GGNGGSGGGGGGGGGGSGGSGGGGSNSNSGGGGGNGGGGNGGGG 835
Score = 28.7 bits (61), Expect = 9.6
Identities = 16/44 (36%), Positives = 17/44 (38%)
Frame = +3
Query: 408 GXXGGXXXGNXGXGGGXDXXXXGGRKKRPPPAXSXX*XGXGGGG 539
G GG G G GGG GG + S G GGGG
Sbjct: 787 GGGGGGGNGGSGGGGGGGGGGSGGSGGGGSNSNSGGGGGNGGGG 830
>Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical
protein T28C6.1 protein.
Length = 281
Score = 29.1 bits (62), Expect = 7.3
Identities = 21/65 (32%), Positives = 21/65 (32%), Gaps = 1/65 (1%)
Frame = +3
Query: 408 GXXGGXXXGNXGXGGGXDXXXXGGRKKRPPPAXSXX*XGXGG-GGXIXXXXKXEXGRXXG 584
G GG G G GGG GGR G GG GG G G
Sbjct: 51 GTGGGRGGGRGGSGGGRGGGSGGGRGGSGGAGAGGSGSGSGGWGGQDGGSSAGGWGGSQG 110
Query: 585 GXQXG 599
G Q G
Sbjct: 111 GSQGG 115
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 29.1 bits (62), Expect = 7.3
Identities = 16/44 (36%), Positives = 17/44 (38%)
Frame = -2
Query: 538 PPPPXPXYXXX*AGGGRFFLPPXXXXSXPPPXPXXPXXXPPXSP 407
PPPP P AGG PP PP P PP +P
Sbjct: 122 PPPPPPPRKSR-AGGSSPPPPPPPRVPRTPPPRSPPPRRPPMTP 164
>AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical
protein Y71H2AM.19 protein.
Length = 643
Score = 29.1 bits (62), Expect = 7.3
Identities = 19/57 (33%), Positives = 21/57 (36%)
Frame = +3
Query: 432 GNXGXGGGXDXXXXGGRKKRPPPAXSXX*XGXGGGGXIXXXXKXEXGRXXGGXQXGG 602
G G GG + GGR R G GGGG + G GG Q GG
Sbjct: 569 GYRGRGGRGNGQRFGGRDHRYQGGSGNGGGGNGGGGGFGGGGQRSGG--GGGFQSGG 623
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 29.1 bits (62), Expect = 7.3
Identities = 16/55 (29%), Positives = 17/55 (30%)
Frame = -2
Query: 535 PPPXPXYXXX*AGGGRFFLPPXXXXSXPPPXPXXPXXXPPXSPXFLGXXXXPXXP 371
PPP P A G +PP P P PP P G P P
Sbjct: 542 PPPPPIAGLLAANGTNVPIPPPPPPPLPQNLSGAPPPPPPPPPMLGGPPPPPPPP 596
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,708,848
Number of Sequences: 27780
Number of extensions: 202448
Number of successful extensions: 1031
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3663150656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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