Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_I02
         (1224 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces pom...    30   0.57 
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi...    29   1.7  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    29   1.7  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    28   3.0  
SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|ch...    26   9.3  

>SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 30.3 bits (65), Expect = 0.57
 Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 5/117 (4%)
 Frame = +1

Query: 250 KLQVLANLA--NFAYDPVNYSYIRDVGVLDIFLYVLKNETIGRLIRYAIAGVCNLCLDPL 423
           K+Q  A LA  N A D      I     L   L +L++  +  LI  ++A + N+ + PL
Sbjct: 266 KVQCQAALALRNLASDERYQIEIVQSNALPSLLRLLRSSYLP-LILASVACIRNISIHPL 324

Query: 424 NADYILTHLGLKPLFRLLKSSDTDTV-ADTITTL--IYMYNEKTKTEITDQDVINMM 585
           N   I+    L+PL  LL  ++ + +    ++TL  +   +E+ K  I + + I  +
Sbjct: 325 NESPIIDAGFLRPLVDLLSCTENEEIQCHAVSTLRNLAASSERNKRAIIEANAIQKL 381


>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 865

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +1

Query: 433 YILTHLGLKPLFRLLKSSDTDTVADTITTLIYMYNEKTKTEITDQDV 573
           YI+   GL  L +L     + + A  I  +IY Y     TE+  + V
Sbjct: 553 YIIVQYGLFALTKLSARLGSSSTASRIDKIIYSYKRNKNTEVQQRSV 599


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
 Frame = +1

Query: 244 EAKLQVLANLANFAYDPVNY--SYIRDVGVLDIFLYVLKNETIGRLI---RYAIAGVCNL 408
           E  ++ L +L+   Y  ++   +Y  D  + D+ + +LK  T   L+   RY+ A V  L
Sbjct: 448 ELIVECLGSLSRIPYFLIDLYVNYDCDPQMSDLAIDLLKVLTRNCLVDSARYSTANVPPL 507

Query: 409 CLDPLNADYILTHLGLKPLFRLLKSSDTDTVADTI 513
           CLD L       H  L+P +    ++  D VA T+
Sbjct: 508 CLDALLNFIYYFHEHLQPCYNDPNNTFKDDVAKTL 542


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
           Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 15/44 (34%), Positives = 27/44 (61%)
 Frame = +1

Query: 775 SFSNTAFKAGDKIRIQKTLTQKDLDAFSNLTGDHNYLHQNSGNV 906
           S SNT+ K    + +Q  +++  ++ F+ LT D NY+ QN+G +
Sbjct: 858 SISNTSGKVN--VILQSYISRAHVEDFT-LTSDTNYVAQNAGRI 898


>SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 234

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +1

Query: 466 FRLLKSSDTDTVADTITTLIYMYNEKTKTEITDQDVINMMSNL 594
           ++ LKS+ T TVA   +   Y +  K KT  T   + +  S++
Sbjct: 95  YKSLKSNSTTTVATVPSEKRYFFRRKPKTSSTTNSLSSSSSSV 137


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,997,414
Number of Sequences: 5004
Number of extensions: 77742
Number of successful extensions: 185
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 663396606
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)