Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_I02
         (1224 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0033 - 19437746-19437916,19438063-19438145,19438266-194383...    97   2e-20
07_03_0809 - 21669632-21669637,21669871-21670131,21670573-216707...    31   1.4  
05_01_0579 - 5196888-5196970,5197063-5197621,5197704-5197786,519...    31   1.8  
05_04_0351 + 20521164-20522132,20522604-20522706,20522890-20523440     31   2.4  
06_03_0791 - 24641350-24641418,24641684-24641965,24642318-246425...    29   9.8  
05_05_0174 - 22960732-22960815,22960907-22961419,22961576-229620...    29   9.8  

>11_06_0033 -
           19437746-19437916,19438063-19438145,19438266-19438359,
           19438478-19438551,19438825-19438861,19440767-19440844,
           19440927-19441022,19441719-19441815,19441910-19442015,
           19442136-19442208,19442537-19442680,19443241-19443681
          Length = 497

 Score = 97.1 bits (231), Expect = 2e-20
 Identities = 54/138 (39%), Positives = 78/138 (56%), Gaps = 3/138 (2%)
 Frame = +1

Query: 238 DNEAKLQVLANLANFAYDPVNYSYIRDVGVLDIFLYVLKNETIGRLIRYAIAGVCNLCLD 417
           D E+K +++ANLANFAYDP NY+++R + +L++FL  +  E   RLI + I G+CN C D
Sbjct: 356 DEESKERIVANLANFAYDPYNYTFMRQLNILELFLDCI-TEPNERLIEFGIGGICNSCAD 414

Query: 418 PLNADYILTHLGLKPL-FRLLKSSDTDTVADTITTLIYMYNEKTKTEITDQDVINMMSNL 594
           P NA  ++TH G  PL  + L S   +TV   +  L Y+ N  TK +I   +V+  +   
Sbjct: 415 PANAS-VITHCGGIPLVIQCLSSPVKNTVNYALGALYYLCNPSTKKDILKPEVLKAVREY 473

Query: 595 KTTQDLR--IVNLATVFL 642
               D      NLA  FL
Sbjct: 474 AVAGDANTSFRNLANAFL 491


>07_03_0809 -
           21669632-21669637,21669871-21670131,21670573-21670752,
           21671458-21672819
          Length = 602

 Score = 31.5 bits (68), Expect = 1.4
 Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
 Frame = +1

Query: 439 LTHLGLKPLFRLLKS--SDTDTVADTITT-LIYMYNEKTKTE--ITDQDVINMMSNLKTT 603
           ++HL L+ +  L++   S TD++ D I    I M N   KTE  +    V+++++   T 
Sbjct: 443 ISHLDLRFVIELIRDEKSVTDSMIDNIQLPYIRMLNLALKTEGHVYGASVLHILTKRTTI 502

Query: 604 QDLRIVNLATVFLQNVCK 657
            +LR+VN       + CK
Sbjct: 503 AELRLVNQEKFKSDDACK 520


>05_01_0579 -
           5196888-5196970,5197063-5197621,5197704-5197786,
           5199165-5199279,5199376-5199473,5200136-5200183,
           5200313-5200415,5201003-5201119,5201254-5201430,
           5202563-5202593,5203492-5203604,5203824-5204036
          Length = 579

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = +1

Query: 781 SNTAFKAGDKIRIQKTLTQKDLDAFSNLTGDHNYLHQNSGNVR 909
           S+   K GD +R ++  T  +++A++ ++GD N +H +    R
Sbjct: 28  SSLVLKVGDTLRERRRFTDGEVEAYAAVSGDRNPVHLDDAFAR 70


>05_04_0351 + 20521164-20522132,20522604-20522706,20522890-20523440
          Length = 540

 Score = 30.7 bits (66), Expect = 2.4
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
 Frame = -2

Query: 422 SGSKHKLQTPAMAYLINLPIVSFFSTYKNISSTPTSLMYE-*FTGSYAKFAKLAKTCNFA 246
           S + HK+     + LI+L  +S    YK +  T  +++ E    G+ AK+++    C   
Sbjct: 318 SNTCHKVIDRVASTLIDLANISMLGDYKKLGDTIVTVLQEWNIAGAAAKYSEALALCPMK 377

Query: 245 SLSKR-----NRASC 216
           S  +R     NRA C
Sbjct: 378 SKKERVVLYSNRAQC 392


>06_03_0791 -
           24641350-24641418,24641684-24641965,24642318-24642537,
           24642657-24642776,24643056-24643132,24643220-24643339,
           24644121-24644186,24644265-24644479,24645450-24645582,
           24646562-24646708,24647301-24647596,24648222-24648319,
           24648425-24648471,24649340-24649449,24649663-24649735,
           24650795-24650899
          Length = 725

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 12/50 (24%), Positives = 23/50 (46%)
 Frame = +1

Query: 745 YQKICKIHTTSFSNTAFKAGDKIRIQKTLTQKDLDAFSNLTGDHNYLHQN 894
           Y+++C +     +N  F     +R+Q+ LT       SN   ++ +L  N
Sbjct: 138 YEELCILGVAEDANECFSEATALRLQQELTSTSNVEKSNFVNENRFLSSN 187


>05_05_0174 -
           22960732-22960815,22960907-22961419,22961576-22962058,
           22964191-22964673
          Length = 520

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +1

Query: 472 LLKSSDTDTVADTITTLIYMYNEKTKTEITDQDVINMMSNLKTTQD-LRIVNLATVFLQN 648
           + K   +D V   +  +I   N KTK E+ + +V  ++    T QD LR  ++A+  L+ 
Sbjct: 56  VFKRLSSDPVGIRVHDVIIKGNAKTKEELIEAEVAELLRAAPTVQDLLRNASIASARLRQ 115

Query: 649 V 651
           +
Sbjct: 116 L 116


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,901,363
Number of Sequences: 37544
Number of extensions: 428228
Number of successful extensions: 779
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3759607596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)