BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_I02
(1224 letters)
Database: mosquito
2352 sequences; 563,979 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calc... 29 0.36
>EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calcium
channel alpha2-delta subunit 1 protein.
Length = 1256
Score = 28.7 bits (61), Expect = 0.36
Identities = 32/133 (24%), Positives = 56/133 (42%)
Frame = +1
Query: 226 LLRLDNEAKLQVLANLANFAYDPVNYSYIRDVGVLDIFLYVLKNETIGRLIRYAIAGVCN 405
+L ++E + +++ ++ +D N+S R +L + + E I ++I GV
Sbjct: 477 ILGRESENRRKLVTTVSTPVFDRRNHS-TRAANLLGVVGTDVPIEEIQKMIPQHKLGVNG 535
Query: 406 LCLDPLNADYILTHLGLKPLFRLLKSSDTDTVADTITTLIYMYNEKTKTEITDQDVINMM 585
N +L H L+PL SD D + TL + YN TE+ +V N
Sbjct: 536 YAFIVDNNGRVLYHPDLRPL------SDNDQYS---ATLKHKYNSVDLTEVELPEVDNPS 586
Query: 586 SNLKTTQDLRIVN 624
+ + D R N
Sbjct: 587 NTINERHDQRYAN 599
Database: mosquito
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 563,979
Number of sequences in database: 2352
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,024,517
Number of Sequences: 2352
Number of extensions: 18861
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 563,979
effective HSP length: 66
effective length of database: 408,747
effective search space used: 139382727
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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