Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_I01
(1237 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc... 67 5e-12
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S... 65 2e-11
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|... 61 3e-10
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 27 4.1
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 27 5.4
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A... 27 5.4
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 27 5.4
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub... 27 5.4
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2... 27 5.4
>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 109
Score = 66.9 bits (156), Expect = 5e-12
Identities = 40/111 (36%), Positives = 54/111 (48%)
Frame = +3
Query: 123 VSKAEXACVXSALILVDXXVAVTGXXISTILKAAAVXVAPYWPGLFAKALEGINVRDLIT 302
+S +E A SALIL D + +T + ++ KAA V V P W +FAKALEG ++++L+
Sbjct: 1 MSASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLL 60
Query: 303 NIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 455
NIGSG SD+DMGFGLFD
Sbjct: 61 NIGSGA--GAAPVAGGAAAPAAADGEAPAEEKEEAKEEEESDEDMGFGLFD 109
>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 64.9 bits (151), Expect = 2e-11
Identities = 39/111 (35%), Positives = 53/111 (47%)
Frame = +3
Query: 123 VSKAEXACVXSALILVDXXVAVTGXXISTILKAAAVXVAPYWPGLFAKALEGINVRDLIT 302
+S +E A SALIL D + +T + ++ KAA V V P W +FAKALEG ++++L+
Sbjct: 1 MSASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLL 60
Query: 303 NIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 455
NIGS SD+DMGFGLFD
Sbjct: 61 NIGSAA-AAPAAGGAGAPAAAAGGEAAAEEQKEEAKEEEESDEDMGFGLFD 110
>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 109
Score = 61.3 bits (142), Expect = 3e-10
Identities = 37/111 (33%), Positives = 52/111 (46%)
Frame = +3
Query: 123 VSKAEXACVXSALILVDXXVAVTGXXISTILKAAAVXVAPYWPGLFAKALEGINVRDLIT 302
+S +E A +ALIL D + +T + ++ KA V V P W +FAKALEG ++++L+
Sbjct: 1 MSASELATSYAALILADEGIEITSDKLLSLTKAGNVEVEPIWATIFAKALEGKDLKELLL 60
Query: 303 NIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 455
NIGS SD+DMGFGLFD
Sbjct: 61 NIGSA--GAASAPTAAGAGAAAPAEAAEEEKKEEAKEEEESDEDMGFGLFD 109
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 27.5 bits (58), Expect = 4.1
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Frame = +2
Query: 83 LRPPATCTFKTQNGVKS*IXMCXLCSHPGGXXCCRNWXXNFHHLE---SGGCXC 235
L P +CTF + + +C LC H C + W N + S GC C
Sbjct: 1259 LVPRMSCTFCCLS-IHGLCIVCGLCLHVMHEDCYKEWFSNGDSISQSCSSGCGC 1311
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 27.1 bits (57), Expect = 5.4
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +3
Query: 423 SDDDMGFGLFD 455
SD+DMGFGLFD
Sbjct: 302 SDEDMGFGLFD 312
>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 27.1 bits (57), Expect = 5.4
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +3
Query: 423 SDDDMGFGLFD 455
SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 27.1 bits (57), Expect = 5.4
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Frame = +3
Query: 45 FVSTQTLL-VLSRXSGLR-QLARSKLKMVSKAEXACVXSALILV---DXXVAVTGXXIST 209
F ST+ ++ V+ LR + R+ L+ + E S L+L D A++ IS
Sbjct: 81 FESTEAIIWVVDSLDDLRLEECRNTLQELLVEEKLLFTSILVLANKSDVSGALSSEEISK 140
Query: 210 ILKAAAVXVAPYWPGLFAKALEGINVRDLIT 302
IL + + +W AL G+N++D I+
Sbjct: 141 ILNISKYK-SSHWRIFSVSALTGLNIKDAIS 170
>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 27.1 bits (57), Expect = 5.4
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +3
Query: 423 SDDDMGFGLFD 455
SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110
>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 110
Score = 27.1 bits (57), Expect = 5.4
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +3
Query: 423 SDDDMGFGLFD 455
SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,242,569
Number of Sequences: 5004
Number of extensions: 27658
Number of successful extensions: 116
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 671365334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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