Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_I01
(1237 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC087079-6|AAK27864.1| 111|Caenorhabditis elegans Ribosomal pro... 95 9e-20
U89307-1|AAB48625.1| 111|Caenorhabditis elegans ribosomal prote... 91 1e-18
Z19158-2|CAA79571.3| 262|Caenorhabditis elegans Hypothetical pr... 29 6.8
Z79754-9|CAB02098.1| 312|Caenorhabditis elegans Hypothetical pr... 29 9.0
U97194-7|AAB52450.2| 107|Caenorhabditis elegans Hypothetical pr... 29 9.0
AL132865-1|CAB60595.1| 110|Caenorhabditis elegans Hypothetical ... 29 9.0
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 23 9.0
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 23 9.0
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 23 9.3
>AC087079-6|AAK27864.1| 111|Caenorhabditis elegans Ribosomal
protein, acidic protein 1 protein.
Length = 111
Score = 95.1 bits (226), Expect = 9e-20
Identities = 52/112 (46%), Positives = 62/112 (55%)
Frame = +3
Query: 120 MVSKAEXACVXSALILVDXXVAVTGXXISTILKAAAVXVAPYWPGLFAKALEGINVRDLI 299
M S E ACV +ALIL D VA+TG I+T+LKAA V PYWPGLFAKALEG++V++LI
Sbjct: 1 MASNQELACVYAALILQDDEVAITGEKIATLLKAANVEFEPYWPGLFAKALEGVDVKNLI 60
Query: 300 TNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 455
T++ SG SDDDMGFGLFD
Sbjct: 61 TSVSSGA-GSGPAPAAAAAAPAAGGAAPAAETKKKEEPKEESDDDMGFGLFD 111
>U89307-1|AAB48625.1| 111|Caenorhabditis elegans ribosomal protein
P1 homolog protein.
Length = 111
Score = 91.5 bits (217), Expect = 1e-18
Identities = 51/112 (45%), Positives = 61/112 (54%)
Frame = +3
Query: 120 MVSKAEXACVXSALILVDXXVAVTGXXISTILKAAAVXVAPYWPGLFAKALEGINVRDLI 299
M S E ACV +ALIL D VA+TG I+T+LKAA V P WPGLFAKALEG++V++LI
Sbjct: 1 MASNQELACVYAALILQDDEVAITGEKIATLLKAANVEFEPNWPGLFAKALEGVDVKNLI 60
Query: 300 TNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 455
T++ SG SDDDMGFGLFD
Sbjct: 61 TSVSSGA-GSGPAPAAAAAAPAAGGAAPAAETKKKEEPKEESDDDMGFGLFD 111
>Z19158-2|CAA79571.3| 262|Caenorhabditis elegans Hypothetical
protein T23G5.3 protein.
Length = 262
Score = 29.1 bits (62), Expect = 6.8
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -2
Query: 867 PGVXRXIXXXKPPPPPPXP 811
P V R + KPPPPPP P
Sbjct: 130 PIVPRNLLLSKPPPPPPPP 148
>Z79754-9|CAB02098.1| 312|Caenorhabditis elegans Hypothetical
protein F25H2.10 protein.
Length = 312
Score = 28.7 bits (61), Expect = 9.0
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +3
Query: 423 SDDDMGFGLFD 455
SDDDMGFGLFD
Sbjct: 302 SDDDMGFGLFD 312
>U97194-7|AAB52450.2| 107|Caenorhabditis elegans Hypothetical
protein C37A2.7 protein.
Length = 107
Score = 28.7 bits (61), Expect = 9.0
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +3
Query: 423 SDDDMGFGLFD 455
SDDDMGFGLFD
Sbjct: 97 SDDDMGFGLFD 107
>AL132865-1|CAB60595.1| 110|Caenorhabditis elegans Hypothetical
protein Y62E10A.1 protein.
Length = 110
Score = 28.7 bits (61), Expect = 9.0
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +3
Query: 423 SDDDMGFGLFD 455
SDDDMGFGLFD
Sbjct: 100 SDDDMGFGLFD 110
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 23.4 bits (48), Expect(2) = 9.0
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = -2
Query: 867 PGVXRXIXXXKPPPPPP 817
PG I PPPPPP
Sbjct: 732 PGGLPPITGGPPPPPPP 748
Score = 23.4 bits (48), Expect(2) = 9.0
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = -2
Query: 867 PGVXRXIXXXKPPPPPP 817
PG I PPPPPP
Sbjct: 748 PGGLPPISGGPPPPPPP 764
Score = 23.4 bits (48), Expect(2) = 9.0
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -2
Query: 834 PPPPPPXP 811
PPPPPP P
Sbjct: 758 PPPPPPPP 765
Score = 23.4 bits (48), Expect(2) = 9.0
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -2
Query: 834 PPPPPPXP 811
PPPPPP P
Sbjct: 769 PPPPPPPP 776
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 23.4 bits (48), Expect(2) = 9.0
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = -2
Query: 867 PGVXRXIXXXKPPPPPP 817
PG I PPPPPP
Sbjct: 732 PGGLPPITGGPPPPPPP 748
Score = 23.4 bits (48), Expect(2) = 9.0
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = -2
Query: 867 PGVXRXIXXXKPPPPPP 817
PG I PPPPPP
Sbjct: 748 PGGLPPISGGPPPPPPP 764
Score = 23.4 bits (48), Expect(2) = 9.0
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -2
Query: 834 PPPPPPXP 811
PPPPPP P
Sbjct: 758 PPPPPPPP 765
Score = 23.4 bits (48), Expect(2) = 9.0
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -2
Query: 834 PPPPPPXP 811
PPPPPP P
Sbjct: 769 PPPPPPPP 776
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 23.4 bits (48), Expect(2) = 9.3
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = -2
Query: 867 PGVXRXIXXXKPPPPPP 817
PG I PPPPPP
Sbjct: 315 PGGLPPITGGPPPPPPP 331
Score = 23.4 bits (48), Expect(2) = 9.3
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = -2
Query: 867 PGVXRXIXXXKPPPPPP 817
PG I PPPPPP
Sbjct: 331 PGGLPPISGGPPPPPPP 347
Score = 23.4 bits (48), Expect(2) = 9.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -2
Query: 834 PPPPPPXP 811
PPPPPP P
Sbjct: 341 PPPPPPPP 348
Score = 23.4 bits (48), Expect(2) = 9.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -2
Query: 834 PPPPPPXP 811
PPPPPP P
Sbjct: 353 PPPPPPPP 360
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,335,527
Number of Sequences: 27780
Number of extensions: 187400
Number of successful extensions: 1648
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1312
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3422502224
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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