Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_I01
         (1237 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   3.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   3.1  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   4.1  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   4.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   7.2  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   9.6  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -2

Query: 837  KPPPPPPXP 811
            +PPPPPP P
Sbjct: 1354 QPPPPPPPP 1362


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
 Frame = -1

Query: 529 SQFLIT*KLYNRQNGIF-----LFLHKAS*SKRPKPM 434
           S+ +++ +LY+RQNG+      L L K   + +P PM
Sbjct: 275 SKMMVSPRLYDRQNGLVLSRMNLTLAKMEKTSKPLPM 311


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = +2

Query: 146 CXLCSHPGGXXCCRNWXXNF 205
           C L   P    CCR+W   F
Sbjct: 389 CELHMQPRKKNCCRSWLSKF 408


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = +2

Query: 146 CXLCSHPGGXXCCRNWXXNF 205
           C L   P    CCR+W   F
Sbjct: 389 CELHMQPRKKNCCRSWLSKF 408


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -2

Query: 837  KPPPPPPXPXXXNXS 793
            +PPPPPP     N S
Sbjct: 1858 EPPPPPPRNHDQNNS 1872


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -2

Query: 837 KPPPPPPXP 811
           KP PPPP P
Sbjct: 340 KPAPPPPPP 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,411
Number of Sequences: 438
Number of extensions: 2327
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 42142113
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)