Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_H24
         (1393 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          23   5.4  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    23   7.1  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -3

Query: 593 PPPPPPR 573
           PPPPPPR
Sbjct: 732 PPPPPPR 738



 Score = 22.2 bits (45), Expect = 9.4
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -3

Query: 254 NXXPXPPPPP 225
           N  P PPPPP
Sbjct: 728 NNAPPPPPPP 737


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +3

Query: 543 GGGGGGXXXXXGGGGG 590
           GG GGG     G GGG
Sbjct: 93  GGRGGGRDGDRGDGGG 108


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.316    0.162    0.603 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,485
Number of Sequences: 336
Number of extensions: 4571
Number of successful extensions: 18
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 59
effective length of database: 102,761
effective search space used: 41515444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)