Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_H23
(1200 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 33 0.079
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 29 1.3
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom... 27 3.9
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 27 3.9
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 27 5.2
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 27 5.2
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 27 5.2
SPAC21E11.07 ||SPAC2C4.01|glycine cleavage T-protein|Schizosacch... 27 5.2
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 6.8
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha... 27 6.8
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2... 26 9.0
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c... 26 9.0
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p... 26 9.0
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 33.1 bits (72), Expect = 0.079
Identities = 22/94 (23%), Positives = 30/94 (31%), Gaps = 1/94 (1%)
Frame = +3
Query: 330 PAEAHRDSGEEPASGQRRCRSGES-PPEPLGRSRTLRQDSDEAHDDGRKESTAPDRSYRS 506
P H + GE GE PP P+ H + + P +
Sbjct: 274 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEP 333
Query: 507 GEGKEQIPERHRELRSH*AEAHGDVRKEPAPHKG 608
GE P +H EL H H ++ HKG
Sbjct: 334 GEHMPPPPFKHHELEEHEGPEHHRGPEDKEHHKG 367
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 29.1 bits (62), Expect = 1.3
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +3
Query: 285 DPEVF-IRRYREV*FEPAEAHRDSGEEPASGQRRCRSGESPPEPLGRSRTLRQDSDEAHD 461
DPE++ +RR P + D+ ++ + R G R RT+R DEA
Sbjct: 55 DPELYGLRRSGRTRSNPGR-YVDTDDQEDVFPSKHRKGTRNGSSFSRHRTIRDLDDEAES 113
Query: 462 DGRKESTAPDRSY 500
+ES + D SY
Sbjct: 114 VTSEESESDDSSY 126
>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 581
Score = 27.5 bits (58), Expect = 3.9
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -1
Query: 129 QAMLNQEIFDDEGERRCVHFSDXC 58
Q + Q + +DEGER C+ D C
Sbjct: 45 QTLNGQLVEEDEGERNCIFLFDRC 68
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 27.5 bits (58), Expect = 3.9
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
Frame = +1
Query: 163 LPKVATDLKXQLEGFNTSCLRDVDTNEKIVLPSA-------EDVATEKTQKSLFDGIEKF 321
L K +TDL Q E FN C + D + +V A E V E+ + DG+E
Sbjct: 428 LNKWSTDLTTQTEVFNKLCDQVSDWDRTLVDNGALISKLYTETVEAEQMSNRIDDGLEYV 487
Query: 322 DSSQ 333
SSQ
Sbjct: 488 SSSQ 491
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 27.1 bits (57), Expect = 5.2
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -1
Query: 801 IRGCCTSPLPRQGCHCTK 748
+R C +SP PRQG C K
Sbjct: 70 VRDCPSSPNPRQGAECYK 87
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 27.1 bits (57), Expect = 5.2
Identities = 13/62 (20%), Positives = 28/62 (45%)
Frame = +1
Query: 265 EDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKT 444
EDV E+ + + E D + ++ E + +N P+ + + G+E +D+T
Sbjct: 248 EDVDEEEEEDDDENNDEGDDEDENENDELRSENGSPNPSAAVINEQENMNMSGIEEYDET 307
Query: 445 QM 450
+
Sbjct: 308 NL 309
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 27.1 bits (57), Expect = 5.2
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 143 HSLPXKPSPRSPQT*XVSSKASTPAVSVTS 232
HSL +PSPRSP T + ++P + S
Sbjct: 104 HSLTRQPSPRSPLTPLKGNTRASPEIRYVS 133
>SPAC21E11.07 ||SPAC2C4.01|glycine cleavage
T-protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 325
Score = 27.1 bits (57), Expect = 5.2
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Frame = +3
Query: 498 YRSGEGKEQIPERHRELR---SH*AEAHGDVRKEPAPHKGRH*AREISLNHYFITVTRKC 668
Y+ + IPE +E+ S E++ D K HKG + +E+++ Y+ VTRK
Sbjct: 178 YKVFRYRNGIPEGPQEIIPSISFPLESNMDWMKGIDFHKGCYLGQELTVRTYYTGVTRKR 237
Query: 669 I-SLVSPYFNIDVSQ-IDLRRPLQVL 740
I + P + + SQ I+ PL ++
Sbjct: 238 IFPFIIPNYEDNPSQVIEPSAPLSIV 263
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 6.8
Identities = 11/42 (26%), Positives = 20/42 (47%)
Frame = +3
Query: 420 RSRTLRQDSDEAHDDGRKESTAPDRSYRSGEGKEQIPERHRE 545
R+ + ++HD G S + DR + K++ +HRE
Sbjct: 710 RTERKKDTQKQSHDHGHSHSKSHDREKEKEKKKDREHRKHRE 751
>SPAC17H9.08 |||mitochondrial coenzyme A
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 26.6 bits (56), Expect = 6.8
Identities = 19/64 (29%), Positives = 28/64 (43%)
Frame = -3
Query: 910 HXKFGYYTLIICIRSVYGVHSLFIGVRRDLSLGFE*NPGLLYVAIAQAGLPLYKNKNKTC 731
+ + G Y I I VYG+H L+ G L F G+ +VA Q L ++
Sbjct: 57 YSRHGLYKAIKHIYHVYGLHGLYQGHTATLYRVFP-YAGIKFVAYEQVRRVLIRDPEHET 115
Query: 730 NGRR 719
+ RR
Sbjct: 116 HARR 119
>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 426
Score = 26.2 bits (55), Expect = 9.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -1
Query: 288 GLLSGNVFSRRKHNLFIGVDVTETAGVEAFELTLQ 184
G ++G +S +LFIGVD G+ F LQ
Sbjct: 385 GEIAGTAYSSSGDSLFIGVDDPMLGGILEFRRPLQ 419
>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 355
Score = 26.2 bits (55), Expect = 9.0
Identities = 22/71 (30%), Positives = 34/71 (47%)
Frame = +1
Query: 232 DTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDVVAAEKAHQN 411
D EK V S + E+ QK++ D E+ D + T T K+ + EK HQ
Sbjct: 131 DATEKFVTSSYKK-HREEVQKAIEDRKEE-DEKSITDTTTGMKDFYASM-LDRQEKIHQA 187
Query: 412 LLDGVEHFDKT 444
++GV++ KT
Sbjct: 188 AVEGVQNSKKT 198
>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 718
Score = 26.2 bits (55), Expect = 9.0
Identities = 17/60 (28%), Positives = 25/60 (41%)
Frame = +3
Query: 630 SLNHYFITVTRKCISLVSPYFNIDVSQIDLRRPLQVLFLFLYNGNPAWAMATYSNPGFYS 809
+LN Y I+ + SP I +I PL + +GNP + + PG YS
Sbjct: 218 NLNRYDISPAAFILKSGSPSLQIHSVEIPWVEPLALADCIQKSGNPICFLDSAKKPGRYS 277
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,586,485
Number of Sequences: 5004
Number of extensions: 69241
Number of successful extensions: 230
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 647459150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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