Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_H21
         (1244 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    25   1.4  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     24   2.4  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    24   3.2  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   7.3  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    23   7.3  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    23   7.3  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 593 LVNLSEKDYIRKKNKWL 643
           L+N++EK+ I K N WL
Sbjct: 63  LINVNEKNQIMKSNVWL 79


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +2

Query: 338 VRD--LETIAEELRLKDEEQLLQHIEKLDRVVNRGGEK 445
           VRD  +  + +EL +   +++   + KLD ++ R G+K
Sbjct: 126 VRDHNISALCKELGISVVQKVSHTLYKLDEIIERNGDK 163


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +3

Query: 201 SCAALLKAKDWETPFCPTSKLVMLFLTCVVHSMMKTSSMLTV 326
           +CAAL +  +W  P+     LV L +  +V+ M+   ++L +
Sbjct: 50  ACAALYERVEWSGPWI----LVTLIVLAIVNVMVVLGNVLVI 87


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 85  DGARKESFQLLLERLGEDEGFPSRRR 8
           DGA  E F  L+  LG D+    RR+
Sbjct: 311 DGATSEPFPFLMLPLGADDPDSLRRK 336


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 624 EKRTNGYQSSKSGSTKTTPALL*FHSL 704
           EKR+  +Q  +SGS     A + FH +
Sbjct: 236 EKRSTDFQDVESGSESFKRARMGFHGM 262


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 624 EKRTNGYQSSKSGSTKTTPALL*FHSL 704
           EKR+  +Q  +SGS     A + FH +
Sbjct: 236 EKRSTDFQDVESGSESFKRARMGFHGM 262


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 260,903
Number of Sequences: 438
Number of extensions: 5551
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 42502302
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)