Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_H19
(1282 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9VXE0 Cluster: Probable small nuclear ribonucleoprotei... 132 1e-29
UniRef50_P62308 Cluster: Small nuclear ribonucleoprotein G; n=46... 128 3e-28
UniRef50_Q9N4G9 Cluster: Probable small nuclear ribonucleoprotei... 108 3e-22
UniRef50_O74966 Cluster: Probable small nuclear ribonucleoprotei... 94 8e-18
UniRef50_Q54RX0 Cluster: LSM (Like-Sm) domain-containing protein... 85 3e-15
UniRef50_Q677D4 Cluster: Small nuclear ribonucleoprotein polypep... 82 3e-14
UniRef50_Q8IB57 Cluster: Small nuclear ribonucleoprotein, putati... 80 1e-13
UniRef50_Q00XA2 Cluster: Putative small nuclear ribonucleoprotei... 78 4e-13
UniRef50_A2R8P2 Cluster: Function: snRPG of H. sapiens is associ... 78 4e-13
UniRef50_Q2URY1 Cluster: Predicted protein; n=1; Aspergillus ory... 76 2e-12
UniRef50_Q4PED8 Cluster: Putative uncharacterized protein; n=1; ... 73 1e-11
UniRef50_Q6CRN4 Cluster: Similar to sp|P40204 Saccharomyces cere... 72 4e-11
UniRef50_Q5K900 Cluster: U6 snRNA binding protein, putative; n=1... 68 6e-10
UniRef50_UPI000049841B Cluster: small nuclear ribonucleoprotein ... 64 1e-08
UniRef50_A7TGG5 Cluster: Putative uncharacterized protein; n=1; ... 63 1e-08
UniRef50_A6QY75 Cluster: Predicted protein; n=2; Fungi/Metazoa g... 63 1e-08
UniRef50_A7QWV4 Cluster: Chromosome chr13 scaffold_210, whole ge... 62 4e-08
UniRef50_A4S1J9 Cluster: Predicted protein; n=2; Ostreococcus|Re... 62 4e-08
UniRef50_Q4N4E0 Cluster: Small nuclear ribonucleoprotein G, puta... 62 4e-08
UniRef50_Q7SDP3 Cluster: Putative uncharacterized protein NCU019... 60 9e-08
UniRef50_Q9UK45 Cluster: U6 snRNA-associated Sm-like protein LSm... 58 5e-07
UniRef50_Q4MYV9 Cluster: U6 snRNA-associated protein, putative; ... 58 6e-07
UniRef50_A0D0Y9 Cluster: Chromosome undetermined scaffold_33, wh... 58 6e-07
UniRef50_Q4Q5H5 Cluster: Small nuclear ribonucleoprotein, putati... 57 9e-07
UniRef50_O74499 Cluster: U6 snRNP-associated protein Lsm7; n=19;... 56 1e-06
UniRef50_Q6MY59 Cluster: U6 snrna-associated sm-like protein, pu... 56 3e-06
UniRef50_Q2FT45 Cluster: Like-Sm ribonucleoprotein, core; n=3; M... 55 5e-06
UniRef50_Q4Z0C4 Cluster: U6 snRNA-associated Sm-like protein, pu... 53 1e-05
UniRef50_P53905 Cluster: U6 snRNA-associated Sm-like protein LSm... 53 1e-05
UniRef50_UPI0000D9E97B Cluster: PREDICTED: LSM7 homolog, U6 smal... 53 2e-05
UniRef50_Q5CY65 Cluster: Putative uncharacterized protein; n=1; ... 52 2e-05
UniRef50_Q40942 Cluster: Small nucleolar ribonucleoprotein E hom... 52 3e-05
UniRef50_A7PDU1 Cluster: Chromosome chr11 scaffold_13, whole gen... 52 4e-05
UniRef50_Q54W83 Cluster: Putative uncharacterized protein; n=1; ... 51 6e-05
UniRef50_A2GMH6 Cluster: Sm protein; n=3; Trichomonas vaginalis ... 51 7e-05
UniRef50_A7DR38 Cluster: Like-Sm ribonucleoprotein, core; n=1; C... 51 7e-05
UniRef50_A4VCU1 Cluster: Small nuclear ribonucleoprotein E, puta... 50 1e-04
UniRef50_Q8ZYP8 Cluster: Small nuclear ribonucleoprotein homolog... 50 1e-04
UniRef50_Q979R0 Cluster: Small nuclear ribonucleoprotein; n=4; T... 50 1e-04
UniRef50_Q4PA95 Cluster: Putative uncharacterized protein; n=1; ... 49 2e-04
UniRef50_Q9UUI1 Cluster: U6 snRNA-associated Sm-like protein LSm... 49 3e-04
UniRef50_Q6DBW5 Cluster: Zgc:101136; n=6; Euteleostomi|Rep: Zgc:... 48 5e-04
UniRef50_Q1HQ51 Cluster: LSM1-like protein; n=3; Endopterygota|R... 48 7e-04
UniRef50_P47017 Cluster: Sm-like protein LSm1; n=11; Saccharomyc... 48 7e-04
UniRef50_P87173 Cluster: Uncharacterized protein C3D6.08c; n=1; ... 47 0.001
UniRef50_O15116 Cluster: U6 snRNA-associated Sm-like protein LSm... 47 0.001
UniRef50_A1DH91 Cluster: Small nuclear ribonucleoprotein (LSM1),... 46 0.002
UniRef50_Q8TYS2 Cluster: Small nuclear ribonucleoprotein (SnRNP)... 46 0.002
UniRef50_A4S5K5 Cluster: Predicted protein; n=1; Ostreococcus lu... 46 0.003
UniRef50_Q4Q9J1 Cluster: Lsm7p protein, putative; n=6; Trypanoso... 46 0.003
UniRef50_A3H6D3 Cluster: Like-Sm ribonucleoprotein, core; n=1; C... 46 0.003
UniRef50_O26745 Cluster: Putative snRNP Sm-like protein; n=4; Eu... 46 0.003
UniRef50_P62312 Cluster: U6 snRNA-associated Sm-like protein LSm... 46 0.003
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru... 45 0.004
UniRef50_Q01J34 Cluster: OSIGBa0140O07.9 protein; n=5; Oryza sat... 45 0.005
UniRef50_O95777 Cluster: U6 snRNA-associated Sm-like protein LSm... 45 0.005
UniRef50_O75243 Cluster: R30783_1; n=3; Mammalia|Rep: R30783_1 -... 44 0.009
UniRef50_Q6BPZ2 Cluster: Debaryomyces hansenii chromosome E of s... 44 0.009
UniRef50_A2Y859 Cluster: Putative uncharacterized protein; n=2; ... 44 0.011
UniRef50_Q8ZYG5 Cluster: Small nuclear ribonucleoprotein homolog... 44 0.011
UniRef50_O74483 Cluster: U6 snRNA-associated Sm-like protein LSm... 44 0.011
UniRef50_Q6BQK4 Cluster: Similar to CA3420|CaSMX4 Candida albica... 43 0.015
UniRef50_Q20229 Cluster: Putative uncharacterized protein lsm-1;... 43 0.020
UniRef50_Q8SRW7 Cluster: SMALL NUCLEAR RIBONUCLEOPROTEIN G; n=1;... 43 0.020
UniRef50_O29386 Cluster: Putative snRNP Sm-like protein; n=10; A... 43 0.020
UniRef50_Q9YEQ5 Cluster: Putative snRNP Sm-like protein; n=1; Ae... 43 0.020
UniRef50_Q98S49 Cluster: Small nuclear ribonucleoprotein F; n=1;... 42 0.026
UniRef50_Q4V6D7 Cluster: IP05148p; n=2; Drosophila melanogaster|... 42 0.026
UniRef50_A4VDT4 Cluster: Putative uncharacterized protein; n=1; ... 42 0.026
UniRef50_Q6BR90 Cluster: Similar to CA5853|CaLSM6 Candida albica... 42 0.026
UniRef50_P62304 Cluster: Small nuclear ribonucleoprotein E; n=51... 42 0.034
UniRef50_Q4UHZ4 Cluster: (U6) snRNA-associated Sm-like protein, ... 41 0.060
UniRef50_A0C1J5 Cluster: Chromosome undetermined scaffold_142, w... 41 0.060
UniRef50_A3LX11 Cluster: Predicted protein; n=3; Saccharomycetac... 41 0.060
UniRef50_Q05E36 Cluster: Putative small nucleolar RNP protein Sm... 41 0.060
UniRef50_Q7ZUG0 Cluster: Small nuclear ribonucleoprotein E; n=18... 41 0.060
UniRef50_Q7QPB0 Cluster: GLP_122_3813_3433; n=1; Giardia lamblia... 40 0.10
UniRef50_Q17E06 Cluster: Small nuclear ribonucleoprotein, core, ... 40 0.10
UniRef50_Q5K712 Cluster: U6 snRNA-associated sm-like protein lsm... 40 0.10
UniRef50_A1CDT1 Cluster: Small nuclear ribonucleoprotein SmE, pu... 40 0.10
UniRef50_Q2FM21 Cluster: Like-Sm ribonucleoprotein, core; n=4; M... 40 0.10
UniRef50_P57670 Cluster: Putative snRNP Sm-like protein; n=4; Th... 40 0.10
UniRef50_P40018 Cluster: Small nuclear ribonucleoprotein-associa... 40 0.10
UniRef50_Q5CQ90 Cluster: Small nuclear ribonucleoprotein U6; n=1... 40 0.14
UniRef50_Q4MZX3 Cluster: Small nuclear ribonucleoprotein, putati... 40 0.14
UniRef50_Q2R066 Cluster: Small nuclear ribonucleoprotein F, puta... 40 0.18
UniRef50_A1CE19 Cluster: LSM domain protein; n=3; Trichocomaceae... 40 0.18
UniRef50_Q4MZU2 Cluster: U6 snRNA-associated Sm-like protein LSm... 39 0.24
UniRef50_Q755T6 Cluster: AER432Cp; n=1; Eremothecium gossypii|Re... 39 0.24
UniRef50_P34659 Cluster: Probable small nuclear ribonucleoprotei... 39 0.24
UniRef50_Q9SUM2 Cluster: Probable small nuclear ribonucleoprotei... 39 0.24
UniRef50_P40089 Cluster: U6 snRNA-associated Sm-like protein LSm... 39 0.24
UniRef50_P57743 Cluster: U6 snRNA-associated Sm-like protein LSm... 39 0.24
UniRef50_Q6CGS0 Cluster: Similar to sp|P47017 Saccharomyces cere... 39 0.32
UniRef50_Q9Y4Y9 Cluster: U6 snRNA-associated Sm-like protein LSm... 39 0.32
UniRef50_Q9AVY1 Cluster: Putative small nuclear ribonucleoprotei... 38 0.42
UniRef50_A2X0E3 Cluster: Putative uncharacterized protein; n=2; ... 38 0.42
UniRef50_Q7QZM9 Cluster: GLP_680_47464_47838; n=1; Giardia lambl... 38 0.42
UniRef50_A4RQ29 Cluster: U6 snRNA-associated Sm-like protein LSm... 38 0.42
UniRef50_Q8TQX4 Cluster: Sm protein; n=8; Archaea|Rep: Sm protei... 38 0.42
UniRef50_O29885 Cluster: SnRNP, putative; n=1; Archaeoglobus ful... 38 0.42
UniRef50_A3DMZ9 Cluster: Like-Sm ribonucleoprotein, core; n=1; S... 38 0.42
UniRef50_Q24297 Cluster: Small nuclear ribonucleoprotein F; n=7;... 38 0.42
UniRef50_UPI00004984BB Cluster: small nuclear ribonucleoprotein;... 38 0.56
UniRef50_A3BPN8 Cluster: Putative uncharacterized protein; n=1; ... 38 0.56
UniRef50_Q74ZR8 Cluster: AGR130Wp; n=2; Saccharomycetales|Rep: A... 38 0.56
UniRef50_A6R7U2 Cluster: Predicted protein; n=2; Eurotiomycetida... 38 0.56
UniRef50_Q3LW01 Cluster: MRNA splicing factor; n=1; Bigelowiella... 38 0.74
UniRef50_A7AQW8 Cluster: Small nuclear ribonucleoprotein F, puta... 38 0.74
UniRef50_A2E014 Cluster: Sm protein; n=2; Trichomonas vaginalis ... 38 0.74
UniRef50_A0CCJ3 Cluster: Chromosome undetermined scaffold_167, w... 38 0.74
UniRef50_Q701X8 Cluster: Putative uncharacterized protein; n=1; ... 38 0.74
UniRef50_A0D2M7 Cluster: Chromosome undetermined scaffold_35, wh... 37 0.98
UniRef50_Q5KN63 Cluster: Sm-like protein, putative; n=1; Filobas... 37 0.98
UniRef50_Q12330 Cluster: Small nuclear ribonucleoprotein E; n=3;... 37 0.98
UniRef50_A3FQK4 Cluster: Small nuclear ribonucleoprotein, putati... 37 1.3
UniRef50_A7TII8 Cluster: Putative uncharacterized protein; n=1; ... 37 1.3
UniRef50_UPI0000499412 Cluster: U6 snRNA-associated Sm-like prot... 36 1.7
UniRef50_Q9W087 Cluster: CG2021-PA; n=14; Eukaryota|Rep: CG2021-... 36 1.7
UniRef50_Q0WMZ9 Cluster: Sm-like protein; n=19; Eukaryota|Rep: S... 36 2.3
UniRef50_Q8SRU9 Cluster: U6 snRNA-ASSOCIATED SMALL RIBONUCLEOPRO... 36 2.3
UniRef50_Q5CME6 Cluster: Similar to small nuclear ribonucleoprot... 36 3.0
UniRef50_A2EQ40 Cluster: Sm protein; n=1; Trichomonas vaginalis ... 36 3.0
UniRef50_A2DLB2 Cluster: Sm protein; n=2; Trichomonas vaginalis ... 36 3.0
UniRef50_Q3LWL6 Cluster: MRNA splicing protein; n=1; Bigelowiell... 35 3.9
UniRef50_A5AN79 Cluster: Putative uncharacterized protein; n=3; ... 35 3.9
UniRef50_A2DQD7 Cluster: Sm protein; n=1; Trichomonas vaginalis ... 35 3.9
UniRef50_Q4JAY5 Cluster: Conserved Archaeal protein; n=4; Sulfol... 35 3.9
UniRef50_Q8SQK1 Cluster: U6 snRNA-ASSOCIATED RIBONUCLEOPROTEIN; ... 35 5.2
UniRef50_Q6CWY1 Cluster: Kluyveromyces lactis strain NRRL Y-1140... 35 5.2
UniRef50_A6S4U0 Cluster: Putative uncharacterized protein; n=1; ... 35 5.2
UniRef50_Q4JAL0 Cluster: Sm-like protein; n=3; Sulfolobaceae|Rep... 35 5.2
UniRef50_Q8U0P4 Cluster: Putative snRNP Sm-like protein; n=11; E... 35 5.2
UniRef50_UPI00015533A8 Cluster: PREDICTED: similar to Snrpf prot... 34 6.9
UniRef50_Q98RT8 Cluster: Small nucleolar ribonucleoprotein G; n=... 34 6.9
UniRef50_Q4Q2F6 Cluster: Small nuclear ribonucleoprotein, putati... 34 6.9
UniRef50_Q4PB34 Cluster: Putative uncharacterized protein; n=3; ... 34 6.9
UniRef50_Q0UX37 Cluster: Predicted protein; n=1; Phaeosphaeria n... 34 6.9
UniRef50_P62306 Cluster: Small nuclear ribonucleoprotein F; n=20... 34 6.9
UniRef50_UPI00005101A5 Cluster: hypothetical protein BlinB010028... 34 9.1
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma... 34 9.1
UniRef50_Q4P8W1 Cluster: Putative uncharacterized protein; n=1; ... 34 9.1
UniRef50_Q0UQD0 Cluster: Putative uncharacterized protein; n=1; ... 34 9.1
>UniRef50_Q9VXE0 Cluster: Probable small nuclear ribonucleoprotein
G; n=14; Eukaryota|Rep: Probable small nuclear
ribonucleoprotein G - Drosophila melanogaster (Fruit
fly)
Length = 76
Score = 132 bits (320), Expect = 1e-29
Identities = 56/76 (73%), Positives = 71/76 (93%)
Frame = +1
Query: 142 MSKAHPPXLKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMV 321
MSKAHPP +KK+MDK++ +KLN GRAVTG+LRGFDPFMN+VLD++VEECKD +NN+GMV
Sbjct: 1 MSKAHPPEVKKYMDKRMMLKLNGGRAVTGILRGFDPFMNVVLDDTVEECKDNTKNNIGMV 60
Query: 322 VIRGNSIIMLESLDRL 369
VIRGNSI+M+E+LDR+
Sbjct: 61 VIRGNSIVMVEALDRV 76
>UniRef50_P62308 Cluster: Small nuclear ribonucleoprotein G; n=46;
Eukaryota|Rep: Small nuclear ribonucleoprotein G - Homo
sapiens (Human)
Length = 76
Score = 128 bits (309), Expect = 3e-28
Identities = 59/76 (77%), Positives = 67/76 (88%)
Frame = +1
Query: 142 MSKAHPPXLKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMV 321
MSKAHPP LKKFMDKKLS+KLN GR V G+LRGFDPFMNLV+DE VE GQ+NN+GMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
Query: 322 VIRGNSIIMLESLDRL 369
VIRGNSIIMLE+L+R+
Sbjct: 61 VIRGNSIIMLEALERV 76
>UniRef50_Q9N4G9 Cluster: Probable small nuclear ribonucleoprotein
G; n=16; Bilateria|Rep: Probable small nuclear
ribonucleoprotein G - Caenorhabditis elegans
Length = 77
Score = 108 bits (259), Expect = 3e-22
Identities = 46/76 (60%), Positives = 62/76 (81%)
Frame = +1
Query: 142 MSKAHPPXLKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMV 321
MSK HPP LKK+MDK++ +KLN R V+G+LRGFDPFMN+V+DE+VE KDG N+GM
Sbjct: 1 MSKTHPPELKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQKDGGSVNLGMT 60
Query: 322 VIRGNSIIMLESLDRL 369
VIRGNS++++E +R+
Sbjct: 61 VIRGNSVVIMEPKERI 76
>UniRef50_O74966 Cluster: Probable small nuclear ribonucleoprotein
G; n=7; Ascomycota|Rep: Probable small nuclear
ribonucleoprotein G - Schizosaccharomyces pombe (Fission
yeast)
Length = 77
Score = 93.9 bits (223), Expect = 8e-18
Identities = 40/76 (52%), Positives = 61/76 (80%)
Frame = +1
Query: 142 MSKAHPPXLKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMV 321
MSKA P LKK++D+++ ++LN R V GVLRG+D F+N+VL++S+EE DG++ +G V
Sbjct: 1 MSKAGAPDLKKYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEEKVDGEKVKIGSV 60
Query: 322 VIRGNSIIMLESLDRL 369
IRGNS+IM+E+LD++
Sbjct: 61 AIRGNSVIMIETLDKM 76
>UniRef50_Q54RX0 Cluster: LSM (Like-Sm) domain-containing protein;
n=1; Dictyostelium discoideum AX4|Rep: LSM (Like-Sm)
domain-containing protein - Dictyostelium discoideum AX4
Length = 85
Score = 85.4 bits (202), Expect = 3e-15
Identities = 38/78 (48%), Positives = 54/78 (69%)
Frame = +1
Query: 136 ITMSKAHPPXLKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVG 315
+T K P L K +DKKL+IKLN R V G+LRGFD FMN+ L ++VE ++ +G
Sbjct: 1 MTFGKQADPDLTKLLDKKLAIKLNGNRTVHGILRGFDTFMNIALKDTVEVVSPTEKYEIG 60
Query: 316 MVVIRGNSIIMLESLDRL 369
MV+IRGNSI+++E L+ +
Sbjct: 61 MVIIRGNSILLMEPLESM 78
>UniRef50_Q677D4 Cluster: Small nuclear ribonucleoprotein
polypeptide G; n=1; Hyacinthus orientalis|Rep: Small
nuclear ribonucleoprotein polypeptide G - Hyacinthus
orientalis (Common hyacinth)
Length = 96
Score = 82.2 bits (194), Expect = 3e-14
Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 1/78 (1%)
Frame = +1
Query: 133 HITMSKAHPPXLKKFMD-KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNN 309
H + PP LK+ KL IKLNA R V G LRGFD FMNLV+D ++ E +N+
Sbjct: 14 HHAAASGQPPALKQVHGTSKLQIKLNANRVVVGTLRGFDQFMNLVIDNTM-EVNGNDKND 72
Query: 310 VGMVVIRGNSIIMLESLD 363
+GMVVIRGNS++M+E+L+
Sbjct: 73 IGMVVIRGNSVVMIEALE 90
>UniRef50_Q8IB57 Cluster: Small nuclear ribonucleoprotein, putative;
n=8; Eukaryota|Rep: Small nuclear ribonucleoprotein,
putative - Plasmodium falciparum (isolate 3D7)
Length = 83
Score = 79.8 bits (188), Expect = 1e-13
Identities = 41/79 (51%), Positives = 57/79 (72%), Gaps = 1/79 (1%)
Frame = +1
Query: 136 ITMSKAHPPX-LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNV 312
+T+ KA P +KFM+K+L I LN R V G+LRG+D FMNLVLD ++E KD ++ ++
Sbjct: 3 LTVGKAGPASDFRKFMEKRLQIYLNGNRQVVGILRGYDTFMNLVLDNTMEIKKD-EQIDI 61
Query: 313 GMVVIRGNSIIMLESLDRL 369
G+VVIRGNSI E LD++
Sbjct: 62 GVVVIRGNSISYWECLDKV 80
>UniRef50_Q00XA2 Cluster: Putative small nuclear ribonucleoprotein
E; n=1; Ostreococcus tauri|Rep: Putative small nuclear
ribonucleoprotein E - Ostreococcus tauri
Length = 101
Score = 78.2 bits (184), Expect = 4e-13
Identities = 33/64 (51%), Positives = 51/64 (79%)
Frame = +1
Query: 172 KFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSIIML 351
++MDKKL ++LN R+VTG+LRGFD F+NLVLD+S + ++ +GMVV+RGNS++ +
Sbjct: 29 RYMDKKLRLRLNGNRSVTGILRGFDQFLNLVLDDSTNDTTT-EKTPMGMVVVRGNSVVSM 87
Query: 352 ESLD 363
E+L+
Sbjct: 88 EALE 91
>UniRef50_A2R8P2 Cluster: Function: snRPG of H. sapiens is
associated with small nuclear ribonucleoproteins; n=1;
Aspergillus niger|Rep: Function: snRPG of H. sapiens is
associated with small nuclear ribonucleoproteins -
Aspergillus niger
Length = 105
Score = 78.2 bits (184), Expect = 4e-13
Identities = 33/70 (47%), Positives = 54/70 (77%)
Frame = +1
Query: 145 SKAHPPXLKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVV 324
++A+ +++M+K++ +LN R V G+LRG+D FMN+VLDE+ EE + G++ +GM+V
Sbjct: 12 TEANIAVFQQYMEKRVFCQLNGNRKVIGILRGYDVFMNIVLDEAFEEKQGGEKVAIGMIV 71
Query: 325 IRGNSIIMLE 354
IRGNS++MLE
Sbjct: 72 IRGNSVVMLE 81
>UniRef50_Q2URY1 Cluster: Predicted protein; n=1; Aspergillus
oryzae|Rep: Predicted protein - Aspergillus oryzae
Length = 122
Score = 75.8 bits (178), Expect = 2e-12
Identities = 33/59 (55%), Positives = 47/59 (79%)
Frame = +1
Query: 178 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSIIMLE 354
M+K++ +LN R V G+LRG+D FMN+VLDE+ EE + G++ +GMVVIRGNS++MLE
Sbjct: 1 MEKRVFCQLNGNRKVIGILRGYDVFMNIVLDEAFEEKQGGEKVAIGMVVIRGNSVVMLE 59
>UniRef50_Q4PED8 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 134
Score = 73.3 bits (172), Expect = 1e-11
Identities = 36/86 (41%), Positives = 56/86 (65%), Gaps = 10/86 (11%)
Frame = +1
Query: 142 MSKAHPPXLKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEEC----------K 291
M+K P LK+F+DK++++ + GR + G LRGFD F+NLV+DE++E+ +
Sbjct: 48 MAKVSQPELKRFLDKRIAVNIQGGRKIQGTLRGFDMFLNLVVDEAIEQVHPEAGNPNVWQ 107
Query: 292 DGQRNNVGMVVIRGNSIIMLESLDRL 369
DG R G VV+RGNS+ LE+L+ +
Sbjct: 108 DGDR--CGTVVVRGNSVTSLEALENV 131
>UniRef50_Q6CRN4 Cluster: Similar to sp|P40204 Saccharomyces
cerevisiae YFL017wa SNP2 snRNP G protein; n=1;
Kluyveromyces lactis|Rep: Similar to sp|P40204
Saccharomyces cerevisiae YFL017wa SNP2 snRNP G protein -
Kluyveromyces lactis (Yeast) (Candida sphaerica)
Length = 71
Score = 71.7 bits (168), Expect = 4e-11
Identities = 31/67 (46%), Positives = 47/67 (70%)
Frame = +1
Query: 169 KKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSIIM 348
K++MDKKL ++LN R + G+LRG+D F+NLVLD ++ ++G+ V+RGNSI+
Sbjct: 5 KQYMDKKLILQLNGNRKIIGILRGYDAFLNLVLDNPIQIFEEGEVQMGPQTVVRGNSIVS 64
Query: 349 LESLDRL 369
+E LD L
Sbjct: 65 IEPLDSL 71
>UniRef50_Q5K900 Cluster: U6 snRNA binding protein, putative; n=1;
Filobasidiella neoformans|Rep: U6 snRNA binding protein,
putative - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 131
Score = 67.7 bits (158), Expect = 6e-10
Identities = 29/67 (43%), Positives = 48/67 (71%), Gaps = 1/67 (1%)
Frame = +1
Query: 166 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQ-RNNVGMVVIRGNSI 342
L +F+DK + +K GR TG+L+G+D MNLV+D+ VEE +DG+ ++G+VV+RG +I
Sbjct: 29 LAQFVDKSIRVKFMGGREATGILKGYDQLMNLVMDDVVEEYEDGRPTRSLGLVVLRGPNI 88
Query: 343 IMLESLD 363
+++ D
Sbjct: 89 VLVSPTD 95
>UniRef50_UPI000049841B Cluster: small nuclear ribonucleoprotein G;
n=2; Entamoeba histolytica HM-1:IMSS|Rep: small nuclear
ribonucleoprotein G - Entamoeba histolytica HM-1:IMSS
Length = 81
Score = 63.7 bits (148), Expect = 1e-08
Identities = 28/70 (40%), Positives = 51/70 (72%), Gaps = 2/70 (2%)
Frame = +1
Query: 160 PXLKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECK-DGQRN-NVGMVVIRG 333
P LK +++K++ +K++ R++ GVL G+D +MNLVLDE+ + D ++ +GM++I G
Sbjct: 6 PELKHYLEKRILVKIHGKRSIIGVLSGYDEYMNLVLDEAYDASNPDTDKHIPIGMIMILG 65
Query: 334 NSIIMLESLD 363
NSI+ +E++D
Sbjct: 66 NSILSVETID 75
>UniRef50_A7TGG5 Cluster: Putative uncharacterized protein; n=1;
Vanderwaltozyma polyspora DSM 70294|Rep: Putative
uncharacterized protein - Vanderwaltozyma polyspora DSM
70294
Length = 126
Score = 63.3 bits (147), Expect = 1e-08
Identities = 33/75 (44%), Positives = 46/75 (61%), Gaps = 9/75 (12%)
Frame = +1
Query: 166 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKD---------GQRNNVGM 318
L K+ D K+ +KL GR VTGVL+G+DP M LVLDE+VE +D Q ++G+
Sbjct: 41 LAKYKDTKIRVKLMGGRLVTGVLKGYDPLMTLVLDETVEYLRDLEDSSIILKDQTRDLGL 100
Query: 319 VVIRGNSIIMLESLD 363
VIRG ++ L +D
Sbjct: 101 TVIRGTVLLSLSPVD 115
>UniRef50_A6QY75 Cluster: Predicted protein; n=2; Fungi/Metazoa
group|Rep: Predicted protein - Ajellomyces capsulatus
NAm1
Length = 171
Score = 63.3 bits (147), Expect = 1e-08
Identities = 28/70 (40%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Frame = +1
Query: 166 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRN----NVGMVVIRG 333
L K+M+K++ +K N GR VTG L+G+D MNLVLD+ E +D + N ++G++V RG
Sbjct: 87 LTKYMEKEVCVKFNGGREVTGTLKGYDQLMNLVLDDVREVMRDDEGNQTTRSLGLIVARG 146
Query: 334 NSIIMLESLD 363
++++ +D
Sbjct: 147 TLLVLISPVD 156
>UniRef50_A7QWV4 Cluster: Chromosome chr13 scaffold_210, whole
genome shotgun sequence; n=8; Eukaryota|Rep: Chromosome
chr13 scaffold_210, whole genome shotgun sequence -
Vitis vinifera (Grape)
Length = 113
Score = 61.7 bits (143), Expect = 4e-08
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 8/74 (10%)
Frame = +1
Query: 166 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKD--------GQRNNVGMV 321
L KF+DK + +KL GR VTG L+G+D +NLVLDE+VE +D Q +G++
Sbjct: 25 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPQKTTDQTRRLGLI 84
Query: 322 VIRGNSIIMLESLD 363
V RG +++++ D
Sbjct: 85 VCRGTAVMLVSPTD 98
>UniRef50_A4S1J9 Cluster: Predicted protein; n=2; Ostreococcus|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 100
Score = 61.7 bits (143), Expect = 4e-08
Identities = 28/76 (36%), Positives = 50/76 (65%), Gaps = 8/76 (10%)
Frame = +1
Query: 166 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDG--------QRNNVGMV 321
L +F+D+ + +KL+ GR VTG L+G+D +NLVLDE++E +D + +G++
Sbjct: 10 LARFIDRGVRVKLSGGREVTGTLKGYDQLLNLVLDEAIEHLRDAEDALKISDETRALGLL 69
Query: 322 VIRGNSIIMLESLDRL 369
V RG S++++ +LD +
Sbjct: 70 VCRGTSVMVVSALDSM 85
>UniRef50_Q4N4E0 Cluster: Small nuclear ribonucleoprotein G,
putative; n=2; Piroplasmida|Rep: Small nuclear
ribonucleoprotein G, putative - Theileria parva
Length = 86
Score = 61.7 bits (143), Expect = 4e-08
Identities = 30/58 (51%), Positives = 42/58 (72%)
Frame = +1
Query: 196 IKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSIIMLESLDRL 369
+ LN R V GVLRG+D FMN+VLD ++E + Q ++G+VV+RGNSI+ E LDR+
Sbjct: 27 VHLNGSRHVVGVLRGYDTFMNIVLDNALEVVGEDQ-VDLGVVVVRGNSILYWECLDRV 83
>UniRef50_Q7SDP3 Cluster: Putative uncharacterized protein
NCU01930.1; n=2; Sordariomycetes|Rep: Putative
uncharacterized protein NCU01930.1 - Neurospora crassa
Length = 132
Score = 60.5 bits (140), Expect = 9e-08
Identities = 28/66 (42%), Positives = 44/66 (66%)
Frame = +1
Query: 166 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSII 345
LKK+MD+++++K N GR VTG L+G+D MNLVLD+ E + G+VV RG ++
Sbjct: 58 LKKYMDQRITVKFNGGREVTGTLKGYDALMNLVLDDVQEAVR-------GLVVARGTLLV 110
Query: 346 MLESLD 363
++ +D
Sbjct: 111 VISPVD 116
>UniRef50_Q9UK45 Cluster: U6 snRNA-associated Sm-like protein LSm7;
n=26; Eukaryota|Rep: U6 snRNA-associated Sm-like protein
LSm7 - Homo sapiens (Human)
Length = 103
Score = 58.0 bits (134), Expect = 5e-07
Identities = 26/70 (37%), Positives = 43/70 (61%), Gaps = 8/70 (11%)
Frame = +1
Query: 166 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKD--------GQRNNVGMV 321
L K++DK + +K GR +G+L+GFDP +NLVLD ++E +D +G+V
Sbjct: 15 LSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGLV 74
Query: 322 VIRGNSIIML 351
V RG S++++
Sbjct: 75 VCRGTSVVLI 84
>UniRef50_Q4MYV9 Cluster: U6 snRNA-associated protein, putative;
n=2; Theileria|Rep: U6 snRNA-associated protein,
putative - Theileria parva
Length = 104
Score = 57.6 bits (133), Expect = 6e-07
Identities = 29/70 (41%), Positives = 45/70 (64%), Gaps = 8/70 (11%)
Frame = +1
Query: 166 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKD--------GQRNNVGMV 321
L K ++K++ +K + GR V GVLRG D NLVLD++VE KD G++ N+G++
Sbjct: 17 LNKHLNKEVYVKFSGGREVKGVLRGHDAMSNLVLDDTVEYLKDSSDSSKLTGEKRNLGLL 76
Query: 322 VIRGNSIIML 351
V RG S+ ++
Sbjct: 77 VARGTSVTVV 86
>UniRef50_A0D0Y9 Cluster: Chromosome undetermined scaffold_33, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_33,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 104
Score = 57.6 bits (133), Expect = 6e-07
Identities = 39/102 (38%), Positives = 53/102 (51%), Gaps = 17/102 (16%)
Frame = +1
Query: 115 LXSFKKHITMSKAHPPXLKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE---- 282
+ S K+ + + L K+ K+L IKLNA R + G + GFD FMNLVLD E
Sbjct: 1 MQSQKRGQQHKQGYQADLNKYFGKRLKIKLNAKRTIIGTVIGFDIFMNLVLDHCKELIPG 60
Query: 283 ---ECKDG----------QRNNVGMVVIRGNSIIMLESLDRL 369
E KD Q ++G ++RGNSIIM E LD++
Sbjct: 61 QGAENKDNLYPGFSNVTDQLVDIGQAIVRGNSIIMWECLDKV 102
>UniRef50_Q4Q5H5 Cluster: Small nuclear ribonucleoprotein, putative;
n=5; Trypanosomatidae|Rep: Small nuclear
ribonucleoprotein, putative - Leishmania major
Length = 81
Score = 57.2 bits (132), Expect = 9e-07
Identities = 27/73 (36%), Positives = 48/73 (65%), Gaps = 5/73 (6%)
Frame = +1
Query: 160 PXLKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDG-----QRNNVGMVV 324
P L FM+K++ +K+ GR+++GVLRG D M++VL ++++E ++ R +G V
Sbjct: 8 PNLNHFMEKRIVVKIQGGRSISGVLRGVDEHMSIVLHDAMDETRNAAVSEEARLALGTTV 67
Query: 325 IRGNSIIMLESLD 363
IRG++I+ + S D
Sbjct: 68 IRGSAIVEIVSAD 80
>UniRef50_O74499 Cluster: U6 snRNP-associated protein Lsm7; n=19;
Eukaryota|Rep: U6 snRNP-associated protein Lsm7 -
Schizosaccharomyces pombe (Fission yeast)
Length = 113
Score = 56.4 bits (130), Expect = 1e-06
Identities = 24/73 (32%), Positives = 45/73 (61%), Gaps = 7/73 (9%)
Frame = +1
Query: 166 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKD-------GQRNNVGMVV 324
L ++ D+++ GR +TG+L+GFD MNLVLD+ E+ ++ G +G+VV
Sbjct: 28 LSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVV 87
Query: 325 IRGNSIIMLESLD 363
+RG +++++ +D
Sbjct: 88 VRGTTLVLIAPMD 100
>UniRef50_Q6MY59 Cluster: U6 snrna-associated sm-like protein,
putative (Small nuclear ribonucleoprotein (LSM7),
putative); n=2; Pezizomycotina|Rep: U6 snrna-associated
sm-like protein, putative (Small nuclear
ribonucleoprotein (LSM7), putative) - Aspergillus
fumigatus (Sartorya fumigata)
Length = 134
Score = 55.6 bits (128), Expect = 3e-06
Identities = 25/62 (40%), Positives = 39/62 (62%)
Frame = +1
Query: 166 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSII 345
L K+MDK++ +K N GR V+G+L+G+D MNLVLD+ E + N++ + NS I
Sbjct: 55 LSKYMDKEVKVKFNGGREVSGMLKGYDQLMNLVLDDVKESMRGKSLNDITKLDEVSNSAI 114
Query: 346 ML 351
+
Sbjct: 115 QM 116
>UniRef50_Q2FT45 Cluster: Like-Sm ribonucleoprotein, core; n=3;
Methanomicrobiales|Rep: Like-Sm ribonucleoprotein, core
- Methanospirillum hungatei (strain JF-1 / DSM 864)
Length = 80
Score = 54.8 bits (126), Expect = 5e-06
Identities = 28/73 (38%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Frame = +1
Query: 136 ITMSKAHPPXLKKFMDKK-LSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNV 312
I M+K L + ++++ + I L GR + GVL+G+D MNLVLD++ EE GQ ++
Sbjct: 4 IDMTKRPMDILDQVLNRQPVLISLKGGREIKGVLQGYDVHMNLVLDKA-EEIVQGQAQSI 62
Query: 313 GMVVIRGNSIIML 351
G ++IRG+++I +
Sbjct: 63 GTLIIRGDNVIYI 75
>UniRef50_Q4Z0C4 Cluster: U6 snRNA-associated Sm-like protein,
putative; n=4; Plasmodium|Rep: U6 snRNA-associated
Sm-like protein, putative - Plasmodium berghei
Length = 108
Score = 53.2 bits (122), Expect = 1e-05
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 8/89 (8%)
Frame = +1
Query: 109 SVLXSFKKHITMSKAHPPXLKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEEC 288
SVL ++I +KKFM++K+ +K + GR V G L G D NLVLD++ E
Sbjct: 2 SVLPGPTENINKDNKFMNDIKKFMNQKIRVKFDGGREVVGNLIGHDAIFNLVLDKTEEFI 61
Query: 289 KD--------GQRNNVGMVVIRGNSIIML 351
+D + N+G++V RG S+ ++
Sbjct: 62 RDPNDSYVITEKSRNIGLIVARGTSVALI 90
>UniRef50_P53905 Cluster: U6 snRNA-associated Sm-like protein LSm7;
n=6; Saccharomycetales|Rep: U6 snRNA-associated Sm-like
protein LSm7 - Saccharomyces cerevisiae (Baker's yeast)
Length = 115
Score = 53.2 bits (122), Expect = 1e-05
Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 11/77 (14%)
Frame = +1
Query: 166 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECK--DGQRN---------NV 312
L K+ D K+ +KL G+ V GVL+G+D MNLVLD++VE D + N +
Sbjct: 30 LAKYKDSKIRVKLMGGKLVIGVLKGYDQLMNLVLDDTVEYMSNPDDENNTELISKNARKL 89
Query: 313 GMVVIRGNSIIMLESLD 363
G+ VIRG ++ L S +
Sbjct: 90 GLTVIRGTILVSLSSAE 106
>UniRef50_UPI0000D9E97B Cluster: PREDICTED: LSM7 homolog, U6 small
nuclear RNA associated (S. cerevisiae); n=1; Macaca
mulatta|Rep: PREDICTED: LSM7 homolog, U6 small nuclear
RNA associated (S. cerevisiae) - Macaca mulatta
Length = 123
Score = 52.8 bits (121), Expect = 2e-05
Identities = 20/43 (46%), Positives = 31/43 (72%)
Frame = +1
Query: 166 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKD 294
L K++DK + +K GR +G+L+GFDP +NLVLD ++E +D
Sbjct: 15 LSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRD 57
>UniRef50_Q5CY65 Cluster: Putative uncharacterized protein; n=1;
Cryptosporidium parvum Iowa II|Rep: Putative
uncharacterized protein - Cryptosporidium parvum Iowa II
Length = 73
Score = 52.4 bits (120), Expect = 2e-05
Identities = 26/50 (52%), Positives = 33/50 (66%)
Frame = +1
Query: 133 HITMSKAHPPXLKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 282
+I MS L KF +K++ +KL GR V G+LRGFD NLVLDE+VE
Sbjct: 13 NIEMSSKSILGLNKFNNKEIKVKLCGGREVIGILRGFDAVTNLVLDETVE 62
>UniRef50_Q40942 Cluster: Small nucleolar ribonucleoprotein E
homolog; n=2; Bigelowiella natans|Rep: Small nucleolar
ribonucleoprotein E homolog - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 71
Score = 52.0 bits (119), Expect = 3e-05
Identities = 26/71 (36%), Positives = 44/71 (61%)
Frame = +1
Query: 148 KAHPPXLKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVI 327
K + P LK FM++++ I+L + G LRGFD F+N+VL++S + N ++++
Sbjct: 4 KINIPDLKLFMEEEIQIQLKNKLCLKGTLRGFDQFLNIVLEKS---SYSKESNYFDILIV 60
Query: 328 RGNSIIMLESL 360
RGNSI+ + L
Sbjct: 61 RGNSIMSVSKL 71
>UniRef50_A7PDU1 Cluster: Chromosome chr11 scaffold_13, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr11 scaffold_13, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 242
Score = 51.6 bits (118), Expect = 4e-05
Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Frame = +1
Query: 166 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQ---RNNVGMVVIRGN 336
L ++DKKL + L GR + GVLR FD F N VL+ + E G +G+ VIRG
Sbjct: 15 LASYLDKKLLVLLRDGRKLLGVLRSFDQFANAVLEGACERAIVGDIYCDIPLGLYVIRGE 74
Query: 337 SIIMLESLD 363
++++L LD
Sbjct: 75 NVVLLGELD 83
Score = 44.4 bits (100), Expect = 0.006
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Frame = +1
Query: 184 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQ---RNNVGMVVIRGNSIIMLE 354
+KL + L GR + GVLR FD F N VL+ + E G +G+ VIRG ++++L
Sbjct: 135 EKLLVLLRDGRKLLGVLRSFDQFANAVLEGACERAIVGDIYCDIPLGLYVIRGENVVLLG 194
Query: 355 SLD 363
LD
Sbjct: 195 ELD 197
>UniRef50_Q54W83 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 129
Score = 51.2 bits (117), Expect = 6e-05
Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Frame = +1
Query: 178 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDG---QRNNVGMVVIRGNSIIM 348
+DKKL + L GR G++R FD F N+VL +++E G N+G+ IRG+++++
Sbjct: 9 VDKKLIVVLRDGRKFIGIMRTFDQFANIVLQDTIERIYVGDCYSDKNLGLFFIRGDNVVI 68
Query: 349 LESLD 363
L +D
Sbjct: 69 LGEID 73
>UniRef50_A2GMH6 Cluster: Sm protein; n=3; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 81
Score = 50.8 bits (116), Expect = 7e-05
Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Frame = +1
Query: 136 ITMSKAHPPX--LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVL-DESVEECKDGQRN 306
+ M++A PP LK + KK+ I N R V+G+L GFD FMNL + D ++ D
Sbjct: 3 VQMTQAQPPYPELKGHLQKKVKIMSNKDREVSGILTGFDHFMNLTIRDAQIKTPYDKAPV 62
Query: 307 NVGMVVIRGNSIIMLESLD 363
VIRG I+ +E+L+
Sbjct: 63 FCNSCVIRGTMILSVETLN 81
>UniRef50_A7DR38 Cluster: Like-Sm ribonucleoprotein, core; n=1;
Candidatus Nitrosopumilus maritimus SCM1|Rep: Like-Sm
ribonucleoprotein, core - Candidatus Nitrosopumilus
maritimus SCM1
Length = 78
Score = 50.8 bits (116), Expect = 7e-05
Identities = 22/62 (35%), Positives = 40/62 (64%)
Frame = +1
Query: 166 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSII 345
L + +++ + IKL + + G L GFD MNL+LD S E +G+ +G +V+RG++++
Sbjct: 10 LDESINQIVLIKLKGNKTIRGNLLGFDQHMNLLLDSSEEIPAEGEAKGLGSIVVRGDNVV 69
Query: 346 ML 351
M+
Sbjct: 70 MI 71
>UniRef50_A4VCU1 Cluster: Small nuclear ribonucleoprotein E,
putative; n=1; Tetrahymena thermophila SB210|Rep: Small
nuclear ribonucleoprotein E, putative - Tetrahymena
thermophila SB210
Length = 140
Score = 50.4 bits (115), Expect = 1e-04
Identities = 22/70 (31%), Positives = 46/70 (65%), Gaps = 5/70 (7%)
Frame = +1
Query: 175 FMDKKLSIKL----NAGRAVTGVLRGFDPFMNLVLDESVE-ECKDGQRNNVGMVVIRGNS 339
F+ K++ +++ N + G + GFD +MN+VLDE+ E +CK Q+ +G ++++G +
Sbjct: 19 FLQKQVRVQIWLFENTEIKLEGKIIGFDEYMNMVLDETSEVDCKTNQKREIGRILLKGEN 78
Query: 340 IIMLESLDRL 369
I ++ +L++L
Sbjct: 79 ITLIRNLEQL 88
>UniRef50_Q8ZYP8 Cluster: Small nuclear ribonucleoprotein homolog;
n=4; Pyrobaculum|Rep: Small nuclear ribonucleoprotein
homolog - Pyrobaculum aerophilum
Length = 85
Score = 50.4 bits (115), Expect = 1e-04
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Frame = +1
Query: 166 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQ-RNNVGMVVIRGNSI 342
L K ++K++ +L G AV GVL +D MNLVL+++ E K G+ + G +VIRG+ +
Sbjct: 16 LTKMLNKEIIARLKGGVAVKGVLTAYDGCMNLVLNDAAELDKSGEPKTRYGRIVIRGSQV 75
Query: 343 IMLES 357
I + +
Sbjct: 76 IYVST 80
>UniRef50_Q979R0 Cluster: Small nuclear ribonucleoprotein; n=4;
Thermoplasmatales|Rep: Small nuclear ribonucleoprotein -
Thermoplasma volcanium
Length = 71
Score = 50.0 bits (114), Expect = 1e-04
Identities = 22/62 (35%), Positives = 42/62 (67%)
Frame = +1
Query: 166 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSII 345
L++ ++K++S+ L R + G L G+D +MN+VLD+ V+E + +G VVIRG++++
Sbjct: 8 LEESVNKRVSLLLKDNRVLEGTLTGYDDYMNMVLDD-VDENSENVSRKLGTVVIRGSNVV 66
Query: 346 ML 351
+
Sbjct: 67 RI 68
>UniRef50_Q4PA95 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 148
Score = 49.2 bits (112), Expect = 2e-04
Identities = 24/65 (36%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Frame = +1
Query: 178 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQR-NNV--GMVVIRGNSIIM 348
+DKK+ + L G+ + GVLR +D F NLVL ++VE G R +V G+ ++RG ++++
Sbjct: 22 VDKKMLVVLRDGKKLIGVLRSYDQFANLVLQDTVERVFVGNRYGDVARGIFLVRGENVVL 81
Query: 349 LESLD 363
+ +D
Sbjct: 82 MGEID 86
>UniRef50_Q9UUI1 Cluster: U6 snRNA-associated Sm-like protein LSm6;
n=33; Eukaryota|Rep: U6 snRNA-associated Sm-like protein
LSm6 - Schizosaccharomyces pombe (Fission yeast)
Length = 75
Score = 48.8 bits (111), Expect = 3e-04
Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Frame = +1
Query: 166 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNV-GMVVIRGNSI 342
L K + KK+ I+L++G G+L D +MNL L E EE +G++ NV G IRGN++
Sbjct: 9 LNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLAL-ERTEEYVNGKKTNVYGDAFIRGNNV 67
Query: 343 IMLESLD 363
+ + +LD
Sbjct: 68 LYVSALD 74
>UniRef50_Q6DBW5 Cluster: Zgc:101136; n=6; Euteleostomi|Rep:
Zgc:101136 - Danio rerio (Zebrafish) (Brachydanio rerio)
Length = 133
Score = 48.0 bits (109), Expect = 5e-04
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 3/65 (4%)
Frame = +1
Query: 178 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQR-NNV--GMVVIRGNSIIM 348
+DKK + L GR + G+LR D F NLVL ++VE G++ ++ G+ V+RG ++++
Sbjct: 14 IDKKHLVLLRDGRTLIGILRSIDQFANLVLHQTVERIHVGKKFGDIPRGIFVVRGENVVL 73
Query: 349 LESLD 363
L +D
Sbjct: 74 LGEVD 78
>UniRef50_Q1HQ51 Cluster: LSM1-like protein; n=3; Endopterygota|Rep:
LSM1-like protein - Bombyx mori (Silk moth)
Length = 138
Score = 47.6 bits (108), Expect = 7e-04
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Frame = +1
Query: 178 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNN---VGMVVIRGNSIIM 348
+DKKL + L GR + G LR D F NLVL +++E G+ G+ ++RG ++++
Sbjct: 18 LDKKLMVLLRDGRTLIGYLRCVDQFANLVLHKTIERIHVGKEYGDIPRGIFIVRGENVVL 77
Query: 349 LESLDR 366
L +D+
Sbjct: 78 LGEIDK 83
>UniRef50_P47017 Cluster: Sm-like protein LSm1; n=11;
Saccharomycetales|Rep: Sm-like protein LSm1 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 172
Score = 47.6 bits (108), Expect = 7e-04
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Frame = +1
Query: 178 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNV-----GMVVIRGNSI 342
+D+K+ + L GR + GVLR FD + NL+L + VE + N G+ +IRG ++
Sbjct: 50 VDRKIFVLLRDGRMLFGVLRTFDQYANLILQDCVERIYFSEENKYAEEDRGIFMIRGENV 109
Query: 343 IMLESLD 363
+ML +D
Sbjct: 110 VMLGEVD 116
>UniRef50_P87173 Cluster: Uncharacterized protein C3D6.08c; n=1;
Schizosaccharomyces pombe|Rep: Uncharacterized protein
C3D6.08c - Schizosaccharomyces pombe (Fission yeast)
Length = 140
Score = 47.2 bits (107), Expect = 0.001
Identities = 22/69 (31%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Frame = +1
Query: 166 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEEC-KDGQRNNV--GMVVIRGN 336
L ++D+K+ + L G+ + G+LR FD F NL+L ++E D ++ G+ ++RG
Sbjct: 16 LVDYVDRKVIVVLRDGKKLIGILRSFDQFANLMLQYTIERIYVDDMYGDIDRGVYIVRGE 75
Query: 337 SIIMLESLD 363
++++L LD
Sbjct: 76 NVVLLGELD 84
>UniRef50_O15116 Cluster: U6 snRNA-associated Sm-like protein LSm1;
n=23; Eumetazoa|Rep: U6 snRNA-associated Sm-like protein
LSm1 - Homo sapiens (Human)
Length = 133
Score = 46.8 bits (106), Expect = 0.001
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Frame = +1
Query: 178 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNN---VGMVVIRGNSIIM 348
+DKK + L GR + G LR D F NLVL ++VE G++ G+ V+RG ++++
Sbjct: 14 IDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVL 73
Query: 349 LESLD 363
L +D
Sbjct: 74 LGEID 78
>UniRef50_A1DH91 Cluster: Small nuclear ribonucleoprotein (LSM1),
putative; n=11; Pezizomycotina|Rep: Small nuclear
ribonucleoprotein (LSM1), putative - Neosartorya
fischeri (strain ATCC 1020 / DSM 3700 / NRRL
181)(Aspergillus fischerianus (strain ATCC 1020 / DSM
3700 / NRRL 181))
Length = 177
Score = 46.4 bits (105), Expect = 0.002
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Frame = +1
Query: 181 DKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRN---NVGMVVIRGNSIIML 351
DKKL + L GR + GVLR +D F NLVL +++E G G+ ++RG ++++L
Sbjct: 58 DKKLVLVLRDGRKLIGVLRSWDQFANLVLQDTIERLYAGNLYADIPRGIFLVRGENVLLL 117
Query: 352 ESLD 363
+D
Sbjct: 118 GEID 121
>UniRef50_Q8TYS2 Cluster: Small nuclear ribonucleoprotein (SnRNP)
homolog; n=1; Methanopyrus kandleri|Rep: Small nuclear
ribonucleoprotein (SnRNP) homolog - Methanopyrus
kandleri
Length = 73
Score = 46.4 bits (105), Expect = 0.002
Identities = 23/62 (37%), Positives = 40/62 (64%)
Frame = +1
Query: 166 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSII 345
L+ F+D + ++L G+ + G L FD +NLVLD+ VE +D + +G V+IRG+S+
Sbjct: 7 LRDFLDDIVIVELKTGKTLRGRLVSFDGHLNLVLDDCVEIDEDSE-VRLGRVLIRGDSVT 65
Query: 346 ML 351
++
Sbjct: 66 LI 67
>UniRef50_A4S5K5 Cluster: Predicted protein; n=1; Ostreococcus
lucimarinus CCE9901|Rep: Predicted protein -
Ostreococcus lucimarinus CCE9901
Length = 126
Score = 45.6 bits (103), Expect = 0.003
Identities = 20/61 (32%), Positives = 38/61 (62%), Gaps = 3/61 (4%)
Frame = +1
Query: 178 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNN---VGMVVIRGNSIIM 348
+DK+L + L G + G LR FD F N+VL+ +VE G+ + +G+ ++RG ++++
Sbjct: 17 LDKRLLVALRDGSNIIGTLRSFDQFANIVLESAVERIIVGKMFSDIPLGLYIVRGENVVL 76
Query: 349 L 351
+
Sbjct: 77 M 77
>UniRef50_Q4Q9J1 Cluster: Lsm7p protein, putative; n=6;
Trypanosomatidae|Rep: Lsm7p protein, putative -
Leishmania major
Length = 91
Score = 45.6 bits (103), Expect = 0.003
Identities = 26/77 (33%), Positives = 42/77 (54%)
Frame = +1
Query: 133 HITMSKAHPPXLKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNV 312
HI K L+K++D+K+ + G V GVL+GFD +NLVL ++ +D +
Sbjct: 7 HILKKKEGILSLEKYLDRKIVVS-QKGHEVHGVLKGFDNNVNLVLADAELWHRDTHVRKI 65
Query: 313 GMVVIRGNSIIMLESLD 363
G V+RG + ++ S D
Sbjct: 66 GACVVRGGPVNLILSGD 82
>UniRef50_A3H6D3 Cluster: Like-Sm ribonucleoprotein, core; n=1;
Caldivirga maquilingensis IC-167|Rep: Like-Sm
ribonucleoprotein, core - Caldivirga maquilingensis
IC-167
Length = 86
Score = 45.6 bits (103), Expect = 0.003
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Frame = +1
Query: 166 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNV----GMVVIRG 333
L ++K + +KL AGR ++G LR D MN+VLD++ E D + N V G V+IRG
Sbjct: 16 LGMMVNKSVVVKLKAGRVLSGTLRFIDQCMNIVLDDAEE--LDTRTNQVIVRYGKVLIRG 73
Query: 334 NSIIMLESLDRL 369
N ++ + + L
Sbjct: 74 NQVLYVSVRNEL 85
>UniRef50_O26745 Cluster: Putative snRNP Sm-like protein; n=4;
Euryarchaeota|Rep: Putative snRNP Sm-like protein -
Methanobacterium thermoautotrophicum
Length = 81
Score = 45.6 bits (103), Expect = 0.003
Identities = 24/59 (40%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Frame = +1
Query: 178 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQ-RNNVGMVVIRGNSIIML 351
++ + IKL R GVL+ FD MNLVL+++ EE +DG+ +G V+IRG++I+ +
Sbjct: 22 LNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDA-EELEDGEVTRRLGTVLIRGDNIVYI 79
>UniRef50_P62312 Cluster: U6 snRNA-associated Sm-like protein LSm6;
n=22; Eukaryota|Rep: U6 snRNA-associated Sm-like protein
LSm6 - Homo sapiens (Human)
Length = 80
Score = 45.6 bits (103), Expect = 0.003
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Frame = +1
Query: 166 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQ-RNNVGMVVIRGNSI 342
LK+ + + + +KLN+G GVL D +MN+ L E EE +GQ +N G IRGN++
Sbjct: 12 LKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIAL-EQTEEYVNGQLKNKYGDAFIRGNNV 70
Query: 343 IMLESLDR 366
+ + + R
Sbjct: 71 LYISTQKR 78
>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
(SV40)
Length = 364
Score = 45.2 bits (102), Expect = 0.004
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +1
Query: 667 DPDMIRYIDEFGQTTTRMQ 723
DPDMIRYIDEFGQTTTRMQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364
>UniRef50_Q01J34 Cluster: OSIGBa0140O07.9 protein; n=5; Oryza
sativa|Rep: OSIGBa0140O07.9 protein - Oryza sativa
(Rice)
Length = 136
Score = 44.8 bits (101), Expect = 0.005
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Frame = +1
Query: 166 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRN---NVGMVVIRGN 336
L F+DKKL + L GR + G L FD F N+VL + E G+ +G+ VIRG
Sbjct: 16 LAGFLDKKLIVLLRDGRKLLGTLCSFDQFANVVLQGACERVIVGELYCDVPLGLYVIRGE 75
Query: 337 SIIMLESL 360
+++++ L
Sbjct: 76 NVVLIGEL 83
>UniRef50_O95777 Cluster: U6 snRNA-associated Sm-like protein LSm8;
n=23; Eukaryota|Rep: U6 snRNA-associated Sm-like protein
LSm8 - Homo sapiens (Human)
Length = 96
Score = 44.8 bits (101), Expect = 0.005
Identities = 19/70 (27%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
Frame = +1
Query: 166 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRN----NVGMVVIRG 333
L+ ++++ +++ + GR + G L+GFD +NL+LDES E + +G+ ++RG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 334 NSIIMLESLD 363
+++ ++ +D
Sbjct: 65 DNVAVIGEID 74
>UniRef50_O75243 Cluster: R30783_1; n=3; Mammalia|Rep: R30783_1 -
Homo sapiens (Human)
Length = 145
Score = 44.0 bits (99), Expect = 0.009
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 8/55 (14%)
Frame = +1
Query: 211 GRAVTGVLRGFDPFMNLVLDESVEECKD--------GQRNNVGMVVIRGNSIIML 351
GR +G+L+GFDP +NLVLD ++E +D +G+VV RG S++++
Sbjct: 72 GRPRSGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGLVVCRGTSVVLI 126
>UniRef50_Q6BPZ2 Cluster: Debaryomyces hansenii chromosome E of
strain CBS767 of Debaryomyces hansenii; n=1;
Debaryomyces hansenii|Rep: Debaryomyces hansenii
chromosome E of strain CBS767 of Debaryomyces hansenii -
Debaryomyces hansenii (Yeast) (Torulaspora hansenii)
Length = 78
Score = 44.0 bits (99), Expect = 0.009
Identities = 19/42 (45%), Positives = 27/42 (64%)
Frame = +1
Query: 166 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECK 291
L + DK++ +K GR V GVL+GFD MNLVL++ E +
Sbjct: 35 LNNYKDKQIRVKFIGGRQVIGVLKGFDQLMNLVLEDVKENIR 76
>UniRef50_A2Y859 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 141
Score = 43.6 bits (98), Expect = 0.011
Identities = 19/41 (46%), Positives = 27/41 (65%)
Frame = +1
Query: 160 PXLKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 282
P L+ +D+ +S+ N GR + G LRGFD N++LDES E
Sbjct: 6 PGLESLVDQIISVITNDGRNIVGTLRGFDQATNIILDESHE 46
>UniRef50_Q8ZYG5 Cluster: Small nuclear ribonucleoprotein homolog;
n=5; Thermoproteaceae|Rep: Small nuclear
ribonucleoprotein homolog - Pyrobaculum aerophilum
Length = 80
Score = 43.6 bits (98), Expect = 0.011
Identities = 21/62 (33%), Positives = 36/62 (58%)
Frame = +1
Query: 166 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSII 345
L+ + K++ +KL + G+LR FD +NL+L E EE DG G +V+RG +++
Sbjct: 16 LQDSIGKQVLVKLRDSHEIRGILRSFDQHVNLLL-EDAEEIIDGNVYKRGTMVVRGENVL 74
Query: 346 ML 351
+
Sbjct: 75 FI 76
>UniRef50_O74483 Cluster: U6 snRNA-associated Sm-like protein LSm8;
n=1; Schizosaccharomyces pombe|Rep: U6 snRNA-associated
Sm-like protein LSm8 - Schizosaccharomyces pombe
(Fission yeast)
Length = 94
Score = 43.6 bits (98), Expect = 0.011
Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Frame = +1
Query: 166 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEEC----KDGQRNNVGMVVIRG 333
L FM++++ + N GR V G L+GFD NL+L +S E +D + +G+ ++RG
Sbjct: 3 LADFMEQRVQVITNDGRVVLGSLKGFDHTTNLILSDSFERIISMDQDMETIPLGVYLLRG 62
Query: 334 NSIIML 351
++ M+
Sbjct: 63 ENVAMV 68
>UniRef50_Q6BQK4 Cluster: Similar to CA3420|CaSMX4 Candida albicans
CaSMX4 U6 snRNA-associated Sm-like protein; n=2;
Saccharomycetaceae|Rep: Similar to CA3420|CaSMX4 Candida
albicans CaSMX4 U6 snRNA-associated Sm-like protein -
Debaryomyces hansenii (Yeast) (Torulaspora hansenii)
Length = 88
Score = 43.2 bits (97), Expect = 0.015
Identities = 21/68 (30%), Positives = 41/68 (60%), Gaps = 6/68 (8%)
Frame = +1
Query: 178 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE---ECKDGQR---NNVGMVVIRGNS 339
+D+ + +KL R + G L+G+D N++L ++VE + +GQ N MV +RG+S
Sbjct: 21 LDELVLVKLRGAREMKGKLQGYDSHCNMILSDAVEYIYDVPEGQEPVTKNTDMVFVRGDS 80
Query: 340 IIMLESLD 363
+I++ ++
Sbjct: 81 VILISPVN 88
>UniRef50_Q20229 Cluster: Putative uncharacterized protein lsm-1;
n=2; Caenorhabditis|Rep: Putative uncharacterized
protein lsm-1 - Caenorhabditis elegans
Length = 125
Score = 42.7 bits (96), Expect = 0.020
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
Frame = +1
Query: 178 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEE-------CKDGQRNNVGMVVIRGN 336
+DKKL + L GR + G LR D F NL+L++ VE C+ GQ G ++IRG
Sbjct: 18 LDKKLLVVLRDGRKLIGFLRSIDQFANLILEDVVERTFVEKYFCETGQ----GFMLIRGE 73
Query: 337 SIIMLESLD 363
++ + +D
Sbjct: 74 NVELAGEID 82
>UniRef50_Q8SRW7 Cluster: SMALL NUCLEAR RIBONUCLEOPROTEIN G; n=1;
Encephalitozoon cuniculi|Rep: SMALL NUCLEAR
RIBONUCLEOPROTEIN G - Encephalitozoon cuniculi
Length = 78
Score = 42.7 bits (96), Expect = 0.020
Identities = 17/47 (36%), Positives = 28/47 (59%)
Frame = +1
Query: 142 MSKAHPPXLKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 282
M K+ P L + K++ +++ G + G+L G+D FMN+VL E E
Sbjct: 1 MGKSAVPNLASLLHKRIVVRIGGGHTLKGLLTGYDAFMNIVLSEVTE 47
>UniRef50_O29386 Cluster: Putative snRNP Sm-like protein; n=10;
Archaea|Rep: Putative snRNP Sm-like protein -
Archaeoglobus fulgidus
Length = 77
Score = 42.7 bits (96), Expect = 0.020
Identities = 23/63 (36%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Frame = +1
Query: 166 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQR-NNVGMVVIRGNSI 342
L + + + ++L GR G L G+D MNLVL ++ EE ++G+ VG VVIRG+++
Sbjct: 9 LNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDA-EEIQNGEVVRKVGSVVIRGDTV 67
Query: 343 IML 351
+ +
Sbjct: 68 VFV 70
>UniRef50_Q9YEQ5 Cluster: Putative snRNP Sm-like protein; n=1;
Aeropyrum pernix|Rep: Putative snRNP Sm-like protein -
Aeropyrum pernix
Length = 77
Score = 42.7 bits (96), Expect = 0.020
Identities = 16/59 (27%), Positives = 39/59 (66%)
Frame = +1
Query: 175 FMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSIIML 351
++D + +KL +G + GVL+ +D +N++L ++ EE + +G+ ++RG+S++++
Sbjct: 16 YVDTPVLVKLKSGLRIKGVLKTYDQHLNIILGDA-EEIGETSIRRLGLTLVRGDSVVVI 73
>UniRef50_Q98S49 Cluster: Small nuclear ribonucleoprotein F; n=1;
Guillardia theta|Rep: Small nuclear ribonucleoprotein F
- Guillardia theta (Cryptomonas phi)
Length = 73
Score = 42.3 bits (95), Expect = 0.026
Identities = 19/57 (33%), Positives = 34/57 (59%)
Frame = +1
Query: 181 DKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSIIML 351
+K + +KL G + TG+ G D +MN++LD E + +G+V+IR N+I+ +
Sbjct: 12 NKNVFVKLKWGSSYTGIFIGSDNYMNIILDSCSEVITEQNLGFLGLVLIRCNNILFI 68
>UniRef50_Q4V6D7 Cluster: IP05148p; n=2; Drosophila
melanogaster|Rep: IP05148p - Drosophila melanogaster
(Fruit fly)
Length = 99
Score = 42.3 bits (95), Expect = 0.026
Identities = 20/42 (47%), Positives = 25/42 (59%)
Frame = +1
Query: 178 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQR 303
+DKKL + L GR + G LR D F NLVL ++E GQR
Sbjct: 34 VDKKLMVLLRDGRTLIGYLRSVDQFANLVLQRTIERIPCGQR 75
>UniRef50_A4VDT4 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 107
Score = 42.3 bits (95), Expect = 0.026
Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Frame = +1
Query: 166 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNV----GMVVIRG 333
L+K + KK+ I G+ + G+L+G D +N +L + VE + N G+ ++RG
Sbjct: 17 LEKLLFKKIQIITTDGKVLIGILKGLDQALNSILSDCVERVFSSENNTKTIKHGLYLLRG 76
Query: 334 NSIIMLESLD 363
++I +L +D
Sbjct: 77 DNIAVLGEVD 86
>UniRef50_Q6BR90 Cluster: Similar to CA5853|CaLSM6 Candida albicans
CaLSM6; n=3; Ascomycota|Rep: Similar to CA5853|CaLSM6
Candida albicans CaLSM6 - Debaryomyces hansenii (Yeast)
(Torulaspora hansenii)
Length = 84
Score = 42.3 bits (95), Expect = 0.026
Identities = 21/58 (36%), Positives = 33/58 (56%)
Frame = +1
Query: 166 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNS 339
L + + ++++L+ G G L+ D +MN+VLDE+ E Q N G V IRGN+
Sbjct: 21 LSEIIGSSVTVRLHNGVEYLGNLQSIDGYMNIVLDETKEFVGGDQARNYGDVFIRGNN 78
>UniRef50_P62304 Cluster: Small nuclear ribonucleoprotein E; n=51;
Eukaryota|Rep: Small nuclear ribonucleoprotein E - Homo
sapiens (Human)
Length = 92
Score = 41.9 bits (94), Expect = 0.034
Identities = 18/48 (37%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Frame = +1
Query: 220 VTGVLRGFDPFMNLVLDESVE-ECKDGQRNNVGMVVIRGNSIIMLESL 360
+ G + GFD +MNLVLD++ E K R +G ++++G++I +L+S+
Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 90
>UniRef50_Q4UHZ4 Cluster: (U6) snRNA-associated Sm-like protein,
putative; n=3; Piroplasmida|Rep: (U6) snRNA-associated
Sm-like protein, putative - Theileria annulata
Length = 90
Score = 41.1 bits (92), Expect = 0.060
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Frame = +1
Query: 166 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEE--CKDG-QRNNVGMVVIRGN 336
+ K + K+ I + + +TG LRGFD +MN+VL++ V+ DG + + ++ GN
Sbjct: 16 IDKCLGSKIWIIMKNDKEITGTLRGFDDYMNMVLEDVVDYSFSADGVKTTELNDALVNGN 75
Query: 337 SIIML 351
++ ML
Sbjct: 76 NVAML 80
>UniRef50_A0C1J5 Cluster: Chromosome undetermined scaffold_142,
whole genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_142,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 95
Score = 41.1 bits (92), Expect = 0.060
Identities = 18/54 (33%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Frame = +1
Query: 205 NAGRAVTGVLRGFDPFMNLVLDESVE-ECKDGQRNNVGMVVIRGNSIIMLESLD 363
N + G L GFD ++NLVLD +VE + K +G ++++G +I+++ +L+
Sbjct: 38 NDNLRIQGKLAGFDEYLNLVLDRAVEYDRKTKATKELGKILLKGENIVLVRTLE 91
>UniRef50_A3LX11 Cluster: Predicted protein; n=3;
Saccharomycetaceae|Rep: Predicted protein - Pichia
stipitis (Yeast)
Length = 92
Score = 41.1 bits (92), Expect = 0.060
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = +1
Query: 142 MSKAHPPXLK--KFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKD 294
M+ A P L +F+ L + + GR VTG+L DPF NL+L +EE +D
Sbjct: 1 MASASNPSLTPDQFIGSNLRVAIKDGRVVTGILTVIDPFGNLLLSNVIEESED 53
>UniRef50_Q05E36 Cluster: Putative small nucleolar RNP protein Sm;
n=1; Aeropyrum pernix|Rep: Putative small nucleolar RNP
protein Sm - Aeropyrum pernix
Length = 94
Score = 41.1 bits (92), Expect = 0.060
Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Frame = +1
Query: 166 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQR--NNVGMVVIRGNS 339
LK+ ++ ++ +KL G G L D MNL+LD+++E +G R +G V+I+G+
Sbjct: 16 LKEHLNSQIYVKLKDGSEYVGKLVATDTTMNLILDDAIEVADNGTRLVAKIGRVLIKGSM 75
Query: 340 I 342
+
Sbjct: 76 V 76
>UniRef50_Q7ZUG0 Cluster: Small nuclear ribonucleoprotein E; n=18;
Eukaryota|Rep: Small nuclear ribonucleoprotein E - Danio
rerio (Zebrafish) (Brachydanio rerio)
Length = 92
Score = 41.1 bits (92), Expect = 0.060
Identities = 18/48 (37%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Frame = +1
Query: 220 VTGVLRGFDPFMNLVLDESVE-ECKDGQRNNVGMVVIRGNSIIMLESL 360
+ G + GFD +MNLVLD++ E K R +G ++++G++I +L+S+
Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEVHMKTKNRKPLGRIMLKGDNITLLQSV 90
>UniRef50_Q7QPB0 Cluster: GLP_122_3813_3433; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_122_3813_3433 - Giardia lamblia ATCC
50803
Length = 126
Score = 40.3 bits (90), Expect = 0.10
Identities = 22/62 (35%), Positives = 36/62 (58%)
Frame = +1
Query: 166 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSII 345
LK ++ ++S+ L ++TG+L FD MNL+L + EE ++VIRG+SII
Sbjct: 57 LKTSLEDRVSVLLQNNSSITGLLASFDEHMNLIL-INAEETGHSLNRFFPLLVIRGDSII 115
Query: 346 ML 351
+
Sbjct: 116 FV 117
>UniRef50_Q17E06 Cluster: Small nuclear ribonucleoprotein, core,
putative; n=2; Culicidae|Rep: Small nuclear
ribonucleoprotein, core, putative - Aedes aegypti
(Yellowfever mosquito)
Length = 162
Score = 40.3 bits (90), Expect = 0.10
Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Frame = +1
Query: 166 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDG----QRNNVGMVVIRG 333
L+ +++ +SI GR G L+GFD +N++LDES E ++ +G+ +IRG
Sbjct: 71 LESYVNTTVSIITADGRNFVGTLKGFDQTINIILDESHERVYSMNAGIEQVVLGLHIIRG 130
Query: 334 NSIIMLESLD 363
+++ ++ LD
Sbjct: 131 DNVAVIGQLD 140
>UniRef50_Q5K712 Cluster: U6 snRNA-associated sm-like protein lsm6,
putative; n=1; Filobasidiella neoformans|Rep: U6
snRNA-associated sm-like protein lsm6, putative -
Cryptococcus neoformans (Filobasidiella neoformans)
Length = 88
Score = 40.3 bits (90), Expect = 0.10
Identities = 17/68 (25%), Positives = 40/68 (58%)
Frame = +1
Query: 166 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSII 345
L+ + K++ +++ +G TG+L D +MN+ L+++ E + + G +RGN+++
Sbjct: 21 LRNIVGKRVKVRIGSGVDYTGLLTCLDGYMNVALEQAEEWAGEVKTAAYGDCFLRGNNVL 80
Query: 346 MLESLDRL 369
+ +L+ L
Sbjct: 81 YISALEDL 88
>UniRef50_A1CDT1 Cluster: Small nuclear ribonucleoprotein SmE,
putative; n=12; Pezizomycotina|Rep: Small nuclear
ribonucleoprotein SmE, putative - Aspergillus clavatus
Length = 95
Score = 40.3 bits (90), Expect = 0.10
Identities = 16/52 (30%), Positives = 37/52 (71%), Gaps = 5/52 (9%)
Frame = +1
Query: 220 VTGVLRGFDPFMNLVLDESVE-----ECKDGQRNNVGMVVIRGNSIIMLESL 360
+ G +RGFD FMNLV+D++VE + + +R +G ++++G+++ +++++
Sbjct: 43 IEGKIRGFDEFMNLVVDDAVEVRMATKTDEEKRRPLGQILLKGDNVSLIQAV 94
>UniRef50_Q2FM21 Cluster: Like-Sm ribonucleoprotein, core; n=4;
Methanomicrobiales|Rep: Like-Sm ribonucleoprotein, core
- Methanospirillum hungatei (strain JF-1 / DSM 864)
Length = 79
Score = 40.3 bits (90), Expect = 0.10
Identities = 19/54 (35%), Positives = 32/54 (59%)
Frame = +1
Query: 190 LSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSIIML 351
+ +K + GR G L D ++NL L+ES+E + +G +VIRGN+I+ +
Sbjct: 22 VEMKEDEGRTFQGRLVAVDEYLNLHLEESIETSGKNKGRELGTLVIRGNNILSI 75
>UniRef50_P57670 Cluster: Putative snRNP Sm-like protein; n=4;
Thermoplasmatales|Rep: Putative snRNP Sm-like protein -
Thermoplasma acidophilum
Length = 83
Score = 40.3 bits (90), Expect = 0.10
Identities = 17/62 (27%), Positives = 34/62 (54%)
Frame = +1
Query: 166 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSII 345
LK + + + I + R +G+L G+D +MN+VL + E + V++RG+++I
Sbjct: 14 LKSALSRNVLIDVKGNREYSGILEGYDVYMNIVLQNASEIINGENKGVYDRVLVRGDNVI 73
Query: 346 ML 351
+
Sbjct: 74 FV 75
>UniRef50_P40018 Cluster: Small nuclear ribonucleoprotein-associated
protein B; n=4; Saccharomycetales|Rep: Small nuclear
ribonucleoprotein-associated protein B - Saccharomyces
cerevisiae (Baker's yeast)
Length = 196
Score = 40.3 bits (90), Expect = 0.10
Identities = 20/45 (44%), Positives = 24/45 (53%)
Frame = +1
Query: 151 AHPPXLKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEE 285
AH L +D KL + GR G L FD MNLVL+E +EE
Sbjct: 7 AHSSRLANLIDYKLRVLTQDGRVYIGQLMAFDKHMNLVLNECIEE 51
>UniRef50_Q5CQ90 Cluster: Small nuclear ribonucleoprotein U6; n=1;
Cryptosporidium parvum Iowa II|Rep: Small nuclear
ribonucleoprotein U6 - Cryptosporidium parvum Iowa II
Length = 160
Score = 39.9 bits (89), Expect = 0.14
Identities = 20/70 (28%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Frame = +1
Query: 166 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNN---VGMVVIRGN 336
L++ +DK++ + L GR TG+ R FD + +L L+ S E + N G ++ RG+
Sbjct: 46 LEEDLDKEIYVVLRDGRQFTGIFRSFDQYGSLCLERSFEVFSNNDCYNEIYQGCMIFRGD 105
Query: 337 SIIMLESLDR 366
++++ +D+
Sbjct: 106 NLMLCGLIDQ 115
>UniRef50_Q4MZX3 Cluster: Small nuclear ribonucleoprotein, putative;
n=2; Theileria|Rep: Small nuclear ribonucleoprotein,
putative - Theileria parva
Length = 91
Score = 39.9 bits (89), Expect = 0.14
Identities = 15/47 (31%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Frame = +1
Query: 220 VTGVLRGFDPFMNLVLDESVE-ECKDGQRNNVGMVVIRGNSIIMLES 357
+ G +RGFD +MN+VLD + E K + +VG ++++G+ + ++ +
Sbjct: 41 IEGTIRGFDEYMNMVLDNATEVHVKKNVKKDVGRILLKGDCMTLISA 87
>UniRef50_Q2R066 Cluster: Small nuclear ribonucleoprotein F,
putative, expressed; n=5; Oryza sativa|Rep: Small
nuclear ribonucleoprotein F, putative, expressed - Oryza
sativa subsp. japonica (Rice)
Length = 86
Score = 39.5 bits (88), Expect = 0.18
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +1
Query: 160 PXLKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQ-RNNVGMVVIRGN 336
P L K + +KL G G L D +MNL L + EE DGQ N+G ++IR N
Sbjct: 10 PFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQL-ANTEEYIDGQFSGNLGEILIRCN 68
Query: 337 SIIMLESL 360
+++ L +
Sbjct: 69 NVLYLRGV 76
>UniRef50_A1CE19 Cluster: LSM domain protein; n=3;
Trichocomaceae|Rep: LSM domain protein - Aspergillus
clavatus
Length = 108
Score = 39.5 bits (88), Expect = 0.18
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Frame = +1
Query: 166 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQ-RNNVGMVVIRGNS 339
L + + +++KLN+G G L+ D +MN+ L++S +E DG+ R + G IRGN+
Sbjct: 15 LSEIIGAPVTVKLNSGVVYKGELQSVDGYMNIALEQS-KEFMDGKLRRSYGDAFIRGNN 72
>UniRef50_Q4MZU2 Cluster: U6 snRNA-associated Sm-like protein LSm8,
putative; n=2; Piroplasmida|Rep: U6 snRNA-associated
Sm-like protein LSm8, putative - Theileria parva
Length = 94
Score = 39.1 bits (87), Expect = 0.24
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Frame = +1
Query: 160 PXLKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEEC--KDG--QRNNVGMVVI 327
P L++F++ + + GR GVL+GFD NLVL +E D + +G+ ++
Sbjct: 3 PILEQFIECSVFVISVDGRVFVGVLKGFDQLTNLVLYNCLERVYHPDAPVEELELGIYLL 62
Query: 328 RGNSIIMLESLD 363
RG++I+++ +D
Sbjct: 63 RGDNIVLVGEVD 74
>UniRef50_Q755T6 Cluster: AER432Cp; n=1; Eremothecium gossypii|Rep:
AER432Cp - Ashbya gossypii (Yeast) (Eremothecium
gossypii)
Length = 158
Score = 39.1 bits (87), Expect = 0.24
Identities = 20/45 (44%), Positives = 24/45 (53%)
Frame = +1
Query: 151 AHPPXLKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEE 285
+H LK +D KL + GR G L FD MNLVL + VEE
Sbjct: 6 SHRSTLKDLIDYKLRVLSQDGRVYVGTLLAFDAHMNLVLADCVEE 50
>UniRef50_P34659 Cluster: Probable small nuclear ribonucleoprotein
F; n=13; Eukaryota|Rep: Probable small nuclear
ribonucleoprotein F - Caenorhabditis elegans
Length = 85
Score = 39.1 bits (87), Expect = 0.24
Identities = 21/68 (30%), Positives = 33/68 (48%)
Frame = +1
Query: 160 PXLKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNS 339
P L K + KL G GVL D +MNL L + E + N+G ++IR N+
Sbjct: 11 PFLNSLTGKFVVCKLKWGMEYKGVLVAVDSYMNLQLAHAEEYIDGNSQGNLGEILIRCNN 70
Query: 340 IIMLESLD 363
++ + +D
Sbjct: 71 VLYVGGVD 78
>UniRef50_Q9SUM2 Cluster: Probable small nuclear ribonucleoprotein
F; n=7; Magnoliophyta|Rep: Probable small nuclear
ribonucleoprotein F - Arabidopsis thaliana (Mouse-ear
cress)
Length = 88
Score = 39.1 bits (87), Expect = 0.24
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +1
Query: 160 PXLKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQ-RNNVGMVVIRGN 336
P L K + +KL G G L D +MNL L + EE DGQ N+G ++IR N
Sbjct: 10 PFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNT-EEYIDGQLTGNLGEILIRCN 68
Query: 337 SIIMLESL 360
+++ + +
Sbjct: 69 NVLYVRGV 76
>UniRef50_P40089 Cluster: U6 snRNA-associated Sm-like protein LSm5;
n=5; Saccharomycetales|Rep: U6 snRNA-associated Sm-like
protein LSm5 - Saccharomyces cerevisiae (Baker's yeast)
Length = 93
Score = 39.1 bits (87), Expect = 0.24
Identities = 23/70 (32%), Positives = 43/70 (61%), Gaps = 8/70 (11%)
Frame = +1
Query: 166 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE---ECKDGQRN-----NVGMV 321
+ K +++K+ I L + R G L GFD F+N++L+++VE + +D RN + G +
Sbjct: 12 IDKTINQKVLIVLQSNREFEGTLVGFDDFVNVILEDAVEWLIDPEDESRNEKVMQHHGRM 71
Query: 322 VIRGNSIIML 351
++ GN+I +L
Sbjct: 72 LLSGNNIAIL 81
>UniRef50_P57743 Cluster: U6 snRNA-associated Sm-like protein LSm3;
n=2; Saccharomyces cerevisiae|Rep: U6 snRNA-associated
Sm-like protein LSm3 - Saccharomyces cerevisiae (Baker's
yeast)
Length = 89
Score = 39.1 bits (87), Expect = 0.24
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 8/72 (11%)
Frame = +1
Query: 166 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESV--------EECKDGQRNNVGMV 321
LK +D+++ IKL R + G L+ FD N+VL ++V EE + +R MV
Sbjct: 8 LKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESER-RCEMV 66
Query: 322 VIRGNSIIMLES 357
IRG+++ ++ +
Sbjct: 67 FIRGDTVTLIST 78
>UniRef50_Q6CGS0 Cluster: Similar to sp|P47017 Saccharomyces
cerevisiae YJL124c LSM1 Sm-like; n=1; Yarrowia
lipolytica|Rep: Similar to sp|P47017 Saccharomyces
cerevisiae YJL124c LSM1 Sm-like - Yarrowia lipolytica
(Candida lipolytica)
Length = 144
Score = 38.7 bits (86), Expect = 0.32
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = +1
Query: 178 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEE 285
+D+K+ + L GR G+LR FD F NLVL ++ E+
Sbjct: 24 IDRKVVVTLRGGRKFFGILRSFDQFANLVLQDTYEK 59
>UniRef50_Q9Y4Y9 Cluster: U6 snRNA-associated Sm-like protein LSm5;
n=27; Eukaryota|Rep: U6 snRNA-associated Sm-like protein
LSm5 - Homo sapiens (Human)
Length = 91
Score = 38.7 bits (86), Expect = 0.32
Identities = 19/63 (30%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Frame = +1
Query: 172 KFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDE--SVEECKDGQR-NNVGMVVIRGNSI 342
K + ++ I + + + + G L GFD F+N+VL++ E +G+R + +++ GN+I
Sbjct: 20 KCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNI 79
Query: 343 IML 351
ML
Sbjct: 80 TML 82
>UniRef50_Q9AVY1 Cluster: Putative small nuclear ribonucleoprotein
E; n=1; Guillardia theta|Rep: Putative small nuclear
ribonucleoprotein E - Guillardia theta (Cryptomonas phi)
Length = 78
Score = 38.3 bits (85), Expect = 0.42
Identities = 18/45 (40%), Positives = 30/45 (66%)
Frame = +1
Query: 226 GVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSIIMLESL 360
G L GFD FMNLV++ + E+ ++G V+I+G+SI+ + S+
Sbjct: 32 GNLIGFDEFMNLVIENTTEKKDSLIVRDLGYVLIKGDSILTISSI 76
>UniRef50_A2X0E3 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 141
Score = 38.3 bits (85), Expect = 0.42
Identities = 16/40 (40%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Frame = +1
Query: 235 RGFDPFMNLVLDESVE-ECKDGQRNNVGMVVIRGNSIIML 351
+GFD +MNLVLDE+ E K R ++G ++++G++I ++
Sbjct: 97 KGFDEYMNLVLDEAEEINIKKDTRKSLGRILLKGDNITLM 136
>UniRef50_Q7QZM9 Cluster: GLP_680_47464_47838; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_680_47464_47838 - Giardia lamblia
ATCC 50803
Length = 124
Score = 38.3 bits (85), Expect = 0.42
Identities = 21/64 (32%), Positives = 39/64 (60%), Gaps = 6/64 (9%)
Frame = +1
Query: 184 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDG------QRNNVGMVVIRGNSII 345
K + ++L +GR +TGVL+ +D +NLV E+ E ++ +R N ++RG+++I
Sbjct: 62 KPVLVQLRSGRFITGVLKAYDRHLNLVFSEATETWEENGIEYTEERKN---FMLRGDNVI 118
Query: 346 MLES 357
M+ S
Sbjct: 119 MVVS 122
>UniRef50_A4RQ29 Cluster: U6 snRNA-associated Sm-like protein LSm6;
n=2; Pezizomycotina|Rep: U6 snRNA-associated Sm-like
protein LSm6 - Magnaporthe grisea (Rice blast fungus)
(Pyricularia grisea)
Length = 83
Score = 38.3 bits (85), Expect = 0.42
Identities = 16/62 (25%), Positives = 36/62 (58%)
Frame = +1
Query: 166 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSII 345
L + + +++KLN+G G L+ D +MN+ L+++ E ++ + G +RGN+++
Sbjct: 18 LGEIIGNMVTVKLNSGVIYKGELQSVDGYMNIALEKAEEWVAGQKKRSYGDAFVRGNNVM 77
Query: 346 ML 351
+
Sbjct: 78 YI 79
>UniRef50_Q8TQX4 Cluster: Sm protein; n=8; Archaea|Rep: Sm protein -
Methanosarcina acetivorans
Length = 74
Score = 38.3 bits (85), Expect = 0.42
Identities = 17/67 (25%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Frame = +1
Query: 166 LKKFMDKKLSIKLNAG-RAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSI 342
++K + ++ +++ + G L+ D +MNL L +++E + + ++G VV+RGN+I
Sbjct: 7 VQKIVGSRIRVEMKGDLNLLEGTLKSVDDYMNLHLVDTMEIVRGEKVRSLGSVVLRGNNI 66
Query: 343 IMLESLD 363
I++ ++
Sbjct: 67 ILITPVE 73
>UniRef50_O29885 Cluster: SnRNP, putative; n=1; Archaeoglobus
fulgidus|Rep: SnRNP, putative - Archaeoglobus fulgidus
Length = 75
Score = 38.3 bits (85), Expect = 0.42
Identities = 18/65 (27%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Frame = +1
Query: 166 LKKFMDKKLSIKLNAGR-AVTGVLRGFDPFMNLVLDESVEECKDGQR-NNVGMVVIRGNS 339
+K + K + +++ + G L G D +MNL L ++E CK ++ ++G +V+RGN+
Sbjct: 8 VKSMVGKIIRVEMKGEENQLVGKLEGVDDYMNLYLTNAME-CKGEEKVRSLGEIVLRGNN 66
Query: 340 IIMLE 354
+++++
Sbjct: 67 VVLIQ 71
>UniRef50_A3DMZ9 Cluster: Like-Sm ribonucleoprotein, core; n=1;
Staphylothermus marinus F1|Rep: Like-Sm
ribonucleoprotein, core - Staphylothermus marinus
(strain ATCC 43588 / DSM 3639 / F1)
Length = 149
Score = 38.3 bits (85), Expect = 0.42
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = +1
Query: 136 ITMSKAHPPXLKKFMDKKLSIKLNAGRAVTGVLRGFD-PFMNLVLDESVEECKDGQRNNV 312
I S+ L +DKK+ + L GR G+L GFD P +N++L+ +V D + N
Sbjct: 4 IDASRRLAAELAGLVDKKVKVILADGRFYEGILTGFDHPSLNILLENAV----DNKGNKY 59
Query: 313 GMVVIRGNSI 342
V+I+G I
Sbjct: 60 PKVIIKGERI 69
>UniRef50_Q24297 Cluster: Small nuclear ribonucleoprotein F; n=7;
Fungi/Metazoa group|Rep: Small nuclear ribonucleoprotein
F - Drosophila melanogaster (Fruit fly)
Length = 88
Score = 38.3 bits (85), Expect = 0.42
Identities = 19/68 (27%), Positives = 35/68 (51%)
Frame = +1
Query: 160 PXLKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNS 339
P L K + +KL G+ G L D +MN+ L + E + N+G V+IR N+
Sbjct: 11 PFLNGLTGKPVLVKLKWGQEYKGFLVSVDGYMNMQLANTEEVIEGSVTGNLGEVLIRCNN 70
Query: 340 IIMLESLD 363
++ ++ ++
Sbjct: 71 VLYIKGME 78
>UniRef50_UPI00004984BB Cluster: small nuclear ribonucleoprotein;
n=1; Entamoeba histolytica HM-1:IMSS|Rep: small nuclear
ribonucleoprotein - Entamoeba histolytica HM-1:IMSS
Length = 89
Score = 37.9 bits (84), Expect = 0.56
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +1
Query: 205 NAGRAVTGVLRGFDPFMNLVLDESVE-ECKDGQRNNVGMVVIRGNSIIMLESLD 363
N + G L GFD ++NLVL ++ E K R +G ++++G +I ++ ++
Sbjct: 34 NTALRIEGTLSGFDQYINLVLTDTEEVYLKTNTRRKIGTILLKGENISVISKIE 87
>UniRef50_A3BPN8 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (japonica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. japonica
(Rice)
Length = 111
Score = 37.9 bits (84), Expect = 0.56
Identities = 16/45 (35%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Frame = +1
Query: 220 VTGVLRGFDPFMNLVLDESVE-ECKDGQRNNVGMVVIRGNSIIML 351
+ G + GFD +MNLVLD++ E K R ++G ++++G++I ++
Sbjct: 30 IEGRIIGFDEYMNLVLDDAEEINVKKDTRKSLGRILLKGDNITLM 74
>UniRef50_Q74ZR8 Cluster: AGR130Wp; n=2; Saccharomycetales|Rep:
AGR130Wp - Ashbya gossypii (Yeast) (Eremothecium
gossypii)
Length = 80
Score = 37.9 bits (84), Expect = 0.56
Identities = 19/64 (29%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Frame = +1
Query: 166 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE-ECKD-GQRNNVGMVVIRGNS 339
+ + +++ + + L + R TG L GFD F+N+V+++ VE + D + + G +++ GN+
Sbjct: 9 IDRAINQPIWVLLTSNREFTGTLVGFDDFVNVVIEDVVEYDAPDRAVKRHPGRMLLSGNN 68
Query: 340 IIML 351
I +L
Sbjct: 69 ITVL 72
>UniRef50_A6R7U2 Cluster: Predicted protein; n=2;
Eurotiomycetidae|Rep: Predicted protein - Ajellomyces
capsulatus NAm1
Length = 104
Score = 37.9 bits (84), Expect = 0.56
Identities = 16/50 (32%), Positives = 29/50 (58%)
Frame = +1
Query: 202 LNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSIIML 351
L + +G L GFD ++N+VL++ E G + + +++ GN+I ML
Sbjct: 43 LTSNSEFSGTLLGFDDYVNMVLEDVTEFDYTGSQTKLSKILLNGNNICML 92
>UniRef50_Q3LW01 Cluster: MRNA splicing factor; n=1; Bigelowiella
natans|Rep: MRNA splicing factor - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 82
Score = 37.5 bits (83), Expect = 0.74
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 11/75 (14%)
Frame = +1
Query: 166 LKKFMDKKLSIKLNAGRAVTGVLRGF------DPFMNLVL---DESVEECKDGQ--RNNV 312
LKK+++K+++I + G + F D FMNLVL +E + + KD Q R +
Sbjct: 8 LKKYINKRINIVTKNYDRINGRYKKFYRLLAYDKFMNLVLSDVEEYINDKKDSQEIRRVL 67
Query: 313 GMVVIRGNSIIMLES 357
G++V+RG+ II L S
Sbjct: 68 GLMVLRGSEIIYLFS 82
>UniRef50_A7AQW8 Cluster: Small nuclear ribonucleoprotein F,
putative; n=1; Babesia bovis|Rep: Small nuclear
ribonucleoprotein F, putative - Babesia bovis
Length = 94
Score = 37.5 bits (83), Expect = 0.74
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Frame = +1
Query: 160 PXLKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNV--GMVVIRG 333
P L K + + + + L G G L+ FD +MN+ L E+ EE ++G G ++IR
Sbjct: 26 PFLAKLVGQNVFVTLKWGMEYKGFLKSFDSYMNIEL-ENAEEWENGVMKGTLGGTILIRC 84
Query: 334 NSIIMLESLD 363
N+++ + + +
Sbjct: 85 NNVLHIRAAE 94
>UniRef50_A2E014 Cluster: Sm protein; n=2; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 84
Score = 37.5 bits (83), Expect = 0.74
Identities = 18/70 (25%), Positives = 41/70 (58%), Gaps = 9/70 (12%)
Frame = +1
Query: 178 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEEC----KDG-----QRNNVGMVVIR 330
M+K++ +K+ G+ + GVL +D N++L + +E K+G ++N + M+ +R
Sbjct: 15 MEKRVKVKVQEGQELEGVLHAYDEHYNIILGDVLESIMGLDKNGKFIPVRQNQIDMLFVR 74
Query: 331 GNSIIMLESL 360
G+ I+ + ++
Sbjct: 75 GDRIVSIATI 84
>UniRef50_A0CCJ3 Cluster: Chromosome undetermined scaffold_167,
whole genome shotgun sequence; n=3;
Oligohymenophorea|Rep: Chromosome undetermined
scaffold_167, whole genome shotgun sequence - Paramecium
tetraurelia
Length = 138
Score = 37.5 bits (83), Expect = 0.74
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
Frame = +1
Query: 172 KFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEEC--KDG-----QRNNVGMVVIR 330
+++D ++ I L GR + G FD +N++L E E K G + +GM+++R
Sbjct: 9 QWIDYRVRITLGDGRMLVGTFLAFDKHLNVILSECEEYRIRKQGIHEIETKRTLGMIIVR 68
Query: 331 GNSIIMLES 357
G++II L +
Sbjct: 69 GDNIISLSA 77
>UniRef50_Q701X8 Cluster: Putative uncharacterized protein; n=1;
uncultured crenarchaeote|Rep: Putative uncharacterized
protein - uncultured crenarchaeote
Length = 89
Score = 37.5 bits (83), Expect = 0.74
Identities = 17/48 (35%), Positives = 29/48 (60%)
Frame = +1
Query: 166 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNN 309
L++ + K + +KL R+V G ++GFD MN+V+ E+ E + NN
Sbjct: 11 LQESVGKIVLVKLKGRRSVKGKIKGFDKQMNIVITEATEVIEQQSNNN 58
>UniRef50_A0D2M7 Cluster: Chromosome undetermined scaffold_35, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_35,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 83
Score = 37.1 bits (82), Expect = 0.98
Identities = 22/56 (39%), Positives = 33/56 (58%)
Frame = +1
Query: 166 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRG 333
L+ ++K++ I+ GR V G L FD +NLVLDE V E + +G+V+ RG
Sbjct: 12 LQSHINKEVVIQFQGGRQVKGTLLSFDNQLNLVLDE-VRELP--SQRILGLVICRG 64
>UniRef50_Q5KN63 Cluster: Sm-like protein, putative; n=1;
Filobasidiella neoformans|Rep: Sm-like protein, putative
- Cryptococcus neoformans (Filobasidiella neoformans)
Length = 95
Score = 37.1 bits (82), Expect = 0.98
Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 13/80 (16%)
Frame = +1
Query: 166 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDES------VEECKDGQ-------RN 306
+K + +++ IKL R VTGVL +D MN+V+ ++ V+ ++GQ R
Sbjct: 16 VKLALGERVLIKLRGDRIVTGVLHAYDAHMNVVISQAEESIHVVDVTEEGQPLPPRIERR 75
Query: 307 NVGMVVIRGNSIIMLESLDR 366
M+ +RG+ +I+L ++
Sbjct: 76 TAEMLFVRGDGVILLSPAEQ 95
>UniRef50_Q12330 Cluster: Small nuclear ribonucleoprotein E; n=3;
Saccharomycetaceae|Rep: Small nuclear ribonucleoprotein
E - Saccharomyces cerevisiae (Baker's yeast)
Length = 94
Score = 37.1 bits (82), Expect = 0.98
Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 8/59 (13%)
Frame = +1
Query: 211 GRAVTGVLRGFDPFMNLVLDESVE---ECKDGQRN-----NVGMVVIRGNSIIMLESLD 363
G + G + GFD FMN+V+DE+VE DG+ + +G ++++G++I ++ S D
Sbjct: 36 GIRIKGKIVGFDEFMNVVIDEAVEIPVNSADGKEDVEKGTPLGKILLKGDNITLITSAD 94
>UniRef50_A3FQK4 Cluster: Small nuclear ribonucleoprotein, putative;
n=1; Cryptosporidium parvum Iowa II|Rep: Small nuclear
ribonucleoprotein, putative - Cryptosporidium parvum
Iowa II
Length = 92
Score = 36.7 bits (81), Expect = 1.3
Identities = 18/45 (40%), Positives = 33/45 (73%), Gaps = 3/45 (6%)
Frame = +1
Query: 226 GVLRGFDPFMNLVLDESVE--ECKDGQR-NNVGMVVIRGNSIIML 351
GV++GFD +MN+VLD++ E K+ +R +VG +++RG +I ++
Sbjct: 44 GVIQGFDEYMNIVLDQASEVYTKKEVRRETSVGQLLLRGENISLI 88
>UniRef50_A7TII8 Cluster: Putative uncharacterized protein; n=1;
Vanderwaltozyma polyspora DSM 70294|Rep: Putative
uncharacterized protein - Vanderwaltozyma polyspora DSM
70294
Length = 109
Score = 36.7 bits (81), Expect = 1.3
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +1
Query: 160 PXLKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMV-VIRGN 336
P LK +++KK+ I GR + L GFD NLVL + + + G V V ++RG+
Sbjct: 3 PLLKDYLNKKIVIITTEGRCLLATLEGFDKNTNLVLSQVHD--RFGSSGVVQAVQLLRGS 60
Query: 337 SIIMLESLD 363
++ LD
Sbjct: 61 EVVSCGLLD 69
>UniRef50_UPI0000499412 Cluster: U6 snRNA-associated Sm-like
protein; n=1; Entamoeba histolytica HM-1:IMSS|Rep: U6
snRNA-associated Sm-like protein - Entamoeba histolytica
HM-1:IMSS
Length = 71
Score = 36.3 bits (80), Expect = 1.7
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +1
Query: 145 SKAHPPX--LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGM 318
S PP K+ + + SIKLN G G + D MN+VL+ ++E + N
Sbjct: 4 STTSPPIQFFKEALFHECSIKLNDGTIFKGKMTLIDGLMNIVLENAIEYINGNKDNEYPE 63
Query: 319 VVIRGNS 339
IRGN+
Sbjct: 64 CFIRGNN 70
>UniRef50_Q9W087 Cluster: CG2021-PA; n=14; Eukaryota|Rep: CG2021-PA
- Drosophila melanogaster (Fruit fly)
Length = 95
Score = 36.3 bits (80), Expect = 1.7
Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Frame = +1
Query: 166 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE---ECKDG-QRNNVGMVVIRG 333
L+ +++ +SI GR G L+GFD +N+++DE E G ++ +G+ +IRG
Sbjct: 4 LESYINHTVSIITADGRNFIGTLKGFDQTINIIIDECHERVFSTTSGIEQIVLGLHIIRG 63
Query: 334 NSIIMLESLD 363
++I ++ +D
Sbjct: 64 DNIAVIGLID 73
>UniRef50_Q0WMZ9 Cluster: Sm-like protein; n=19; Eukaryota|Rep:
Sm-like protein - Arabidopsis thaliana (Mouse-ear cress)
Length = 88
Score = 35.9 bits (79), Expect = 2.3
Identities = 16/65 (24%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Frame = +1
Query: 166 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDE--SVEECKDGQR-NNVGMVVIRGN 336
+ + + K+ + + + + G+L+GFD ++N+VL++ E +G+R + +++ GN
Sbjct: 14 IDRCIGSKIWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGN 73
Query: 337 SIIML 351
+I +L
Sbjct: 74 NIAIL 78
>UniRef50_Q8SRU9 Cluster: U6 snRNA-ASSOCIATED SMALL
RIBONUCLEOPROTEIN; n=1; Encephalitozoon cuniculi|Rep: U6
snRNA-ASSOCIATED SMALL RIBONUCLEOPROTEIN -
Encephalitozoon cuniculi
Length = 102
Score = 35.9 bits (79), Expect = 2.3
Identities = 18/64 (28%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Frame = +1
Query: 169 KKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQR---NNVGMVVIRGNS 339
+K++++++ + L GR + GV++ FD F ++ LD +E R + +IRG +
Sbjct: 13 EKYLEQEVVVMLRDGRYLYGVMKSFDQFNSVTLDGVIERIFHDTRYAERRHELFIIRGEN 72
Query: 340 IIML 351
I M+
Sbjct: 73 ITMI 76
>UniRef50_Q5CME6 Cluster: Similar to small nuclear
ribonucleoprotein; n=2; Cryptosporidium|Rep: Similar to
small nuclear ribonucleoprotein - Cryptosporidium
hominis
Length = 139
Score = 35.5 bits (78), Expect = 3.0
Identities = 18/67 (26%), Positives = 39/67 (58%), Gaps = 7/67 (10%)
Frame = +1
Query: 166 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE--ECKDGQ-----RNNVGMVV 324
++K+++ ++ + + R + G L FD MNLVL + E K G+ + ++G+++
Sbjct: 1 MQKYINYRIRVTVQDDRVMVGNLMAFDRHMNLVLSDCQEYRRVKKGEEPKELKRSLGLIM 60
Query: 325 IRGNSII 345
+RG +I+
Sbjct: 61 LRGENIV 67
>UniRef50_A2EQ40 Cluster: Sm protein; n=1; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 93
Score = 35.5 bits (78), Expect = 3.0
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Frame = +1
Query: 148 KAHPPXLKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEEC-KDGQRNNVGMVV 324
K + LK+ ++ + N+ + G L GFD +MNLVL +S E K+ R +G +
Sbjct: 17 KIYVSYLKERARLRVHLNDNSKMYMEGNLLGFDEYMNLVLGDSYEVYPKENTRVPLGTSL 76
Query: 325 IRGNSIIMLESLDRL 369
+RG + M+ + +
Sbjct: 77 LRGECVGMVHPIPNI 91
>UniRef50_A2DLB2 Cluster: Sm protein; n=2; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 76
Score = 35.5 bits (78), Expect = 3.0
Identities = 18/66 (27%), Positives = 31/66 (46%)
Frame = +1
Query: 166 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSII 345
L+ + K + L+ G + G L D NLVL ++VE + + IRGN ++
Sbjct: 11 LQATLQKPTHVVLSTGSQLIGTLCTIDALFNLVLRDAVEMSNGNEVGKYQSIFIRGNQVV 70
Query: 346 MLESLD 363
+ + D
Sbjct: 71 HVATAD 76
>UniRef50_Q3LWL6 Cluster: MRNA splicing protein; n=1; Bigelowiella
natans|Rep: MRNA splicing protein - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 80
Score = 35.1 bits (77), Expect = 3.9
Identities = 14/43 (32%), Positives = 29/43 (67%)
Frame = +1
Query: 214 RAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSI 342
+ + G + GFD +MN+VL E+V + K+ ++ +++++GN I
Sbjct: 31 KTINGKIIGFDEYMNIVLSEAVAKNKEVEKIK-NLILVKGNQI 72
>UniRef50_A5AN79 Cluster: Putative uncharacterized protein; n=3; Vitis
vinifera|Rep: Putative uncharacterized protein - Vitis
vinifera (Grape)
Length = 704
Score = 35.1 bits (77), Expect = 3.9
Identities = 21/67 (31%), Positives = 21/67 (31%)
Frame = -1
Query: 1273 PPXGXPPXXPXGXXXPXPXEXXXXXXAGXPGXXGXXGNPGFXXXXXPXXXGXXXXXSGXX 1094
PP PP P G P P G PG PG P S
Sbjct: 203 PPGSAPPTDPPGSAVPPPGSTGAPPPTGPPGSEPSXSPPGSAPPTDPPGXAAPPPGSPGA 262
Query: 1093 PXXTXPP 1073
P T PP
Sbjct: 263 PPPTGPP 269
>UniRef50_A2DQD7 Cluster: Sm protein; n=1; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 107
Score = 35.1 bits (77), Expect = 3.9
Identities = 18/68 (26%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Frame = +1
Query: 166 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQR---NNVGMVVIRGN 336
L++ ++ +++ G + G+L +D MNLVL + E +D Q+ +G++V+RG
Sbjct: 8 LQRLLNGLVTVTTVEGLSFQGILMNYDEHMNLVLRQVEEIPQDNQQREPKRIGLMVMRGC 67
Query: 337 SIIMLESL 360
++ +E++
Sbjct: 68 NVSTVEAV 75
>UniRef50_Q4JAY5 Cluster: Conserved Archaeal protein; n=4;
Sulfolobaceae|Rep: Conserved Archaeal protein -
Sulfolobus acidocaldarius
Length = 144
Score = 35.1 bits (77), Expect = 3.9
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Frame = +1
Query: 136 ITMSKAHPPXLKKFMDKKLSIKLNAGRAVTGVLRGFD--PFMNLVLDESVEECKDGQRNN 309
+++S+ L +DK + +KLN + +GVL F+ PFM +L+ KD N
Sbjct: 1 MSVSRRISGDLGSLLDKTIIVKLNNNKVYSGVLSSFEVSPFMVSLLN-----AKDNDNNM 55
Query: 310 VGMVVIRGNSI 342
V+I GN I
Sbjct: 56 YYKVIINGNMI 66
>UniRef50_Q8SQK1 Cluster: U6 snRNA-ASSOCIATED RIBONUCLEOPROTEIN;
n=1; Encephalitozoon cuniculi|Rep: U6 snRNA-ASSOCIATED
RIBONUCLEOPROTEIN - Encephalitozoon cuniculi
Length = 94
Score = 34.7 bits (76), Expect = 5.2
Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Frame = +1
Query: 187 KLSIKLNAGRAVTGVLRGFDPFMNL-VLDESVEECKDGQRNNVGMVVIRGNSI 342
++S+ L AG V+G L G DP++NL +LD + G +++ + IRG+SI
Sbjct: 14 RVSVMLKAGVYVSGRLGGIDPYLNLSLLDVRILSSHPG-LSSISVCSIRGSSI 65
>UniRef50_Q6CWY1 Cluster: Kluyveromyces lactis strain NRRL Y-1140
chromosome B of strain NRRL Y- 1140 of Kluyveromyces
lactis; n=1; Kluyveromyces lactis|Rep: Kluyveromyces
lactis strain NRRL Y-1140 chromosome B of strain NRRL Y-
1140 of Kluyveromyces lactis - Kluyveromyces lactis
(Yeast) (Candida sphaerica)
Length = 191
Score = 34.7 bits (76), Expect = 5.2
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +1
Query: 166 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEE 285
L +D ++ + + GR G L FD +MNLV+ + VEE
Sbjct: 13 LSDLIDYRIRVATHDGRVYIGQLMAFDAYMNLVMGDCVEE 52
>UniRef50_A6S4U0 Cluster: Putative uncharacterized protein; n=1;
Botryotinia fuckeliana B05.10|Rep: Putative
uncharacterized protein - Botryotinia fuckeliana B05.10
Length = 157
Score = 34.7 bits (76), Expect = 5.2
Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Frame = +1
Query: 169 KKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLD--ESVEECKDGQRNNVGMVVIRGNSI 342
K +D +++++L + G+L+ D ++N+ LD + VEE K ++V V IRG+ +
Sbjct: 67 KTLVDHEVTVELKNDIQIKGILKSVDQYLNIKLDDIQVVEELKYPHLSSVKNVFIRGSVV 126
>UniRef50_Q4JAL0 Cluster: Sm-like protein; n=3; Sulfolobaceae|Rep:
Sm-like protein - Sulfolobus acidocaldarius
Length = 87
Score = 34.7 bits (76), Expect = 5.2
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Frame = +1
Query: 166 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNV---GMVVIRGN 336
LK ++K + +KL G G L D MNLVL + E ++G + V G V+IRG+
Sbjct: 12 LKTALNKIVLVKLKNGEEYVGRLEQSDGTMNLVLKDCT-EYREGTSDPVAKYGRVLIRGS 70
Query: 337 SIIMLESLD 363
+I+ + S+D
Sbjct: 71 NILFI-SID 78
>UniRef50_Q8U0P4 Cluster: Putative snRNP Sm-like protein; n=11;
Euryarchaeota|Rep: Putative snRNP Sm-like protein -
Pyrococcus furiosus
Length = 76
Score = 34.7 bits (76), Expect = 5.2
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Frame = +1
Query: 166 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQ-RNNVGMVVIRGNSI 342
+ K +DK + + L G G L G+D +N+VL + E +DG+ G +VIRG+++
Sbjct: 9 IHKSLDKDVLVILKKGFEFRGKLIGYDIHLNVVL-ANAELLQDGEVVKKYGKIVIRGDNV 67
Query: 343 IML 351
+ +
Sbjct: 68 LAI 70
>UniRef50_UPI00015533A8 Cluster: PREDICTED: similar to Snrpf
protein; n=1; Mus musculus|Rep: PREDICTED: similar to
Snrpf protein - Mus musculus
Length = 209
Score = 34.3 bits (75), Expect = 6.9
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = +1
Query: 160 PXLKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNS 339
P L K + +KL G G L D +MN+ L + E ++G V+IR N+
Sbjct: 132 PFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNN 191
Query: 340 IIMLESLD 363
++ + ++
Sbjct: 192 VLYIRGVE 199
>UniRef50_Q98RT8 Cluster: Small nucleolar ribonucleoprotein G; n=1;
Guillardia theta|Rep: Small nucleolar ribonucleoprotein
G - Guillardia theta (Cryptomonas phi)
Length = 74
Score = 34.3 bits (75), Expect = 6.9
Identities = 19/63 (30%), Positives = 38/63 (60%)
Frame = +1
Query: 166 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSII 345
+ F+ KK+++ L + G L GFD F N+V+ ++ + ++ N + V+IRG+S++
Sbjct: 10 ISNFIQKKVNVILINQINLKGTLVGFDNFSNIVIKKNQVKQENCFINEI--VLIRGDSLV 67
Query: 346 MLE 354
+E
Sbjct: 68 SIE 70
>UniRef50_Q4Q2F6 Cluster: Small nuclear ribonucleoprotein, putative;
n=6; Trypanosomatidae|Rep: Small nuclear
ribonucleoprotein, putative - Leishmania major
Length = 113
Score = 34.3 bits (75), Expect = 6.9
Identities = 15/61 (24%), Positives = 32/61 (52%)
Frame = +1
Query: 187 KLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSIIMLESLDR 366
K+SI++ G G + MN++L ++ + + G+ + V +RG++I+ + D
Sbjct: 17 KVSIEVATGEVYHGTVEELQNNMNVLLKDATKTARGGKETKMDSVFVRGSNIVFFQLPDA 76
Query: 367 L 369
L
Sbjct: 77 L 77
>UniRef50_Q4PB34 Cluster: Putative uncharacterized protein; n=3;
Dikarya|Rep: Putative uncharacterized protein - Ustilago
maydis (Smut fungus)
Length = 136
Score = 34.3 bits (75), Expect = 6.9
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Frame = +1
Query: 205 NAGRAVTGVLRGFDPFMNLVL--DESVEECKDGQRNNVGMVVIRGNSII 345
N + G + GFD FMN+ L E V KD +R +G ++++G++I+
Sbjct: 32 NVDFRIEGKIIGFDEFMNVTLADAEEVWTKKDNKRVELGRILLKGDNIV 80
>UniRef50_Q0UX37 Cluster: Predicted protein; n=1; Phaeosphaeria
nodorum|Rep: Predicted protein - Phaeosphaeria nodorum
(Septoria nodorum)
Length = 80
Score = 34.3 bits (75), Expect = 6.9
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = +1
Query: 166 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 282
+ K + ++ + +N G+ TG L GFD ++N+VL+E E
Sbjct: 21 IDKCVGSQIWVIMNGGKEFTGKLVGFDDYVNMVLEEVTE 59
>UniRef50_P62306 Cluster: Small nuclear ribonucleoprotein F; n=20;
Euteleostomi|Rep: Small nuclear ribonucleoprotein F -
Homo sapiens (Human)
Length = 86
Score = 34.3 bits (75), Expect = 6.9
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = +1
Query: 160 PXLKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNS 339
P L K + +KL G G L D +MN+ L + E ++G V+IR N+
Sbjct: 9 PFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNN 68
Query: 340 IIMLESLD 363
++ + ++
Sbjct: 69 VLYIRGVE 76
>UniRef50_UPI00005101A5 Cluster: hypothetical protein BlinB01002817;
n=1; Brevibacterium linens BL2|Rep: hypothetical protein
BlinB01002817 - Brevibacterium linens BL2
Length = 355
Score = 33.9 bits (74), Expect = 9.1
Identities = 18/60 (30%), Positives = 18/60 (30%)
Frame = +3
Query: 1092 GXXPXXSKXXPXXXGXXXXXNPGFPXXPXXPGXPAXXXXXXSXGXGXXXPXGXXGGXPXG 1271
G P P G PG P P PG P G G P G G P G
Sbjct: 184 GPGPTNGGYGPGGPGGPGGYGPGGPGGPGGPGGPGGYGPGGPGGYGPGGPGGYGPGGPGG 243
>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
Magnoliophyta|Rep: Putative reverse transcriptase -
Zingiber officinale (Ginger)
Length = 49
Score = 33.9 bits (74), Expect = 9.1
Identities = 14/19 (73%), Positives = 14/19 (73%)
Frame = +1
Query: 865 ALMNRPXXGXRRFAYWXPF 921
ALMNRP G RRFAYW F
Sbjct: 26 ALMNRPTRGERRFAYWALF 44
>UniRef50_Q4P8W1 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 382
Score = 33.9 bits (74), Expect = 9.1
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Frame = +1
Query: 145 SKAHPPXLKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEE--CKDGQR--NNV 312
SKA +K F+ + + + GRA GV D N++L ++ E +G+ NV
Sbjct: 10 SKAVETIIKNFVGRTSIVHIPDGRAFRGVFICVDSGKNIILADTDETRLTPEGRTTIRNV 69
Query: 313 GMVVIRGNSIIMLE 354
GMV+I G ++ +E
Sbjct: 70 GMVMIPGEYVVKVE 83
>UniRef50_Q0UQD0 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 187
Score = 33.9 bits (74), Expect = 9.1
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +1
Query: 196 IKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQR-NNVGMVVIRGNSIIMLESLDRL 369
++L +G + G+L D +MNL L E V+ DG + + + +RG++I L D +
Sbjct: 77 VELKSGETLNGLLVNCDTWMNLTLREVVQTSADGDKFMRLPEIYVRGSTIKYLRVPDEI 135
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 896,266,142
Number of Sequences: 1657284
Number of extensions: 14148461
Number of successful extensions: 28796
Number of sequences better than 10.0: 143
Number of HSP's better than 10.0 without gapping: 25771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28588
length of database: 575,637,011
effective HSP length: 103
effective length of database: 404,936,759
effective search space used: 130794573157
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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