Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_H19
         (1282 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces...    94   4e-20
SPCC285.12 |lsm7||U6 snRNP-associated protein Lsm7|Schizosacchar...    56   8e-09
SPAC2F3.17c |lsm6||U6 snRNP-associated protein Lsm6|Schizosaccha...    49   2e-06
SPBC3D6.08c |||mRNA decapping complex subunit |Schizosaccharomyc...    47   5e-06
SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomy...    44   5e-05
SPCC1840.10 |lsm8||U6 snRNP-associated protein Lsm8 |Schizosacch...    44   6e-05
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom...    32   0.20 
SPBC30D10.06 |lsm4||U6 snRNP-associated protein Lsm4|Schizosacch...    31   0.26 
SPBC20F10.09 |lsm5||U6 snRNP-associated protein Lsm5|Schizosacch...    31   0.34 
SPBC9B6.05c |lsm3||U6 snRNP-associated protein Lsm3|Schizosaccha...    27   4.2  
SPCC1620.01c |lsm2||U6 snRNP-associated protein core protein|Sch...    27   4.2  
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    27   5.6  
SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyc...    27   7.4  
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    26   9.7  

>SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 77

 Score = 93.9 bits (223), Expect = 4e-20
 Identities = 40/76 (52%), Positives = 61/76 (80%)
 Frame = +1

Query: 142 MSKAHPPXLKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMV 321
           MSKA  P LKK++D+++ ++LN  R V GVLRG+D F+N+VL++S+EE  DG++  +G V
Sbjct: 1   MSKAGAPDLKKYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEEKVDGEKVKIGSV 60

Query: 322 VIRGNSIIMLESLDRL 369
            IRGNS+IM+E+LD++
Sbjct: 61  AIRGNSVIMIETLDKM 76


>SPCC285.12 |lsm7||U6 snRNP-associated protein
           Lsm7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 113

 Score = 56.4 bits (130), Expect = 8e-09
 Identities = 24/73 (32%), Positives = 45/73 (61%), Gaps = 7/73 (9%)
 Frame = +1

Query: 166 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKD-------GQRNNVGMVV 324
           L ++ D+++      GR +TG+L+GFD  MNLVLD+  E+ ++       G    +G+VV
Sbjct: 28  LSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVV 87

Query: 325 IRGNSIIMLESLD 363
           +RG +++++  +D
Sbjct: 88  VRGTTLVLIAPMD 100


>SPAC2F3.17c |lsm6||U6 snRNP-associated protein
           Lsm6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 75

 Score = 48.8 bits (111), Expect = 2e-06
 Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
 Frame = +1

Query: 166 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNV-GMVVIRGNSI 342
           L K + KK+ I+L++G    G+L   D +MNL L E  EE  +G++ NV G   IRGN++
Sbjct: 9   LNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLAL-ERTEEYVNGKKTNVYGDAFIRGNNV 67

Query: 343 IMLESLD 363
           + + +LD
Sbjct: 68  LYVSALD 74


>SPBC3D6.08c |||mRNA decapping complex subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 140

 Score = 47.2 bits (107), Expect = 5e-06
 Identities = 22/69 (31%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
 Frame = +1

Query: 166 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEEC-KDGQRNNV--GMVVIRGN 336
           L  ++D+K+ + L  G+ + G+LR FD F NL+L  ++E    D    ++  G+ ++RG 
Sbjct: 16  LVDYVDRKVIVVLRDGKKLIGILRSFDQFANLMLQYTIERIYVDDMYGDIDRGVYIVRGE 75

Query: 337 SIIMLESLD 363
           ++++L  LD
Sbjct: 76  NVVLLGELD 84


>SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 84

 Score = 44.0 bits (99), Expect = 5e-05
 Identities = 15/45 (33%), Positives = 33/45 (73%)
 Frame = +1

Query: 226 GVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSIIMLESL 360
           G +RGFD FMN+VLD++V+      +  +G ++++G++I +++++
Sbjct: 40  GQIRGFDEFMNIVLDDAVQVDAKNNKRELGRILLKGDNITLIQAI 84


>SPCC1840.10 |lsm8||U6 snRNP-associated protein Lsm8
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 94

 Score = 43.6 bits (98), Expect = 6e-05
 Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
 Frame = +1

Query: 166 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEEC----KDGQRNNVGMVVIRG 333
           L  FM++++ +  N GR V G L+GFD   NL+L +S E      +D +   +G+ ++RG
Sbjct: 3   LADFMEQRVQVITNDGRVVLGSLKGFDHTTNLILSDSFERIISMDQDMETIPLGVYLLRG 62

Query: 334 NSIIML 351
            ++ M+
Sbjct: 63  ENVAMV 68


>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
           Smb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 31.9 bits (69), Expect = 0.20
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 12/70 (17%)
 Frame = +1

Query: 178 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNV------------GMV 321
           ++  L++    GR   G L  FD FMNLVL +  +E +  ++ NV            G+V
Sbjct: 10  LNHSLNVTTKDGRTFVGQLLAFDGFMNLVLSD-CQEYRHIKKQNVPSNSVYEEKRMLGLV 68

Query: 322 VIRGNSIIML 351
           ++RG  I+ L
Sbjct: 69  ILRGEFIVSL 78


>SPBC30D10.06 |lsm4||U6 snRNP-associated protein
           Lsm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 31.5 bits (68), Expect = 0.26
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = +1

Query: 184 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQR-NNVGMVVIRGNSIIMLESL 360
           + + ++L  G    G L   D +MNL L E +    DG +   +    IRGN+I  L   
Sbjct: 13  RPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYIRGNNIKYLRIQ 72

Query: 361 DRL 369
           D +
Sbjct: 73  DEV 75


>SPBC20F10.09 |lsm5||U6 snRNP-associated protein
           Lsm5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 80

 Score = 31.1 bits (67), Expect = 0.34
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +1

Query: 166 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE-ECKDGQRNNVGMVVIRGNSI 342
           + K +   L + + + R   G L GFD ++N+VL +  E +   G       +++ GN +
Sbjct: 11  IDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTEKHSEMLLNGNGM 70

Query: 343 IML 351
            ML
Sbjct: 71  CML 73


>SPBC9B6.05c |lsm3||U6 snRNP-associated protein
           Lsm3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 93

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +1

Query: 178 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 282
           +D+ + +KL   R + G L  +D  +N+VL ++ E
Sbjct: 18  LDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEE 52


>SPCC1620.01c |lsm2||U6 snRNP-associated protein core
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 96

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 9/34 (26%), Positives = 22/34 (64%)
 Frame = +1

Query: 169 KKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLD 270
           K  +D +++++L    ++ G+L+  D F+N+ L+
Sbjct: 8   KTLIDTEVTVELKNDMSIRGILKSVDQFLNVKLE 41


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1115

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 263  TKFMNGSKPRNTPVTARPAFSFIDNFLSMNF 171
            T+   GSKP NT V A    S ++  ++MNF
Sbjct: 919  TQLNTGSKPVNTNVEALTTISSMNQAVNMNF 949


>SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -2

Query: 420 EAHLQHW*YFLPTPSLLK--SV*RFQHYNTV 334
           ++H  HW Y LPT + LK  SV R  +Y+ V
Sbjct: 247 DSHNSHWWYNLPTEARLKGLSVGRTTNYSVV 277


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 357 RFQHYNTVATNYHHPNIVTL 298
           R Q   T+    HHPNI+TL
Sbjct: 67  RLQREVTILRQLHHPNIITL 86


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,642,758
Number of Sequences: 5004
Number of extensions: 58762
Number of successful extensions: 141
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 697499478
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)