Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_H19
(1282 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF303264-1|AAG50222.1| 77|Caenorhabditis elegans SM protein G ... 108 1e-23
AC024201-5|AAF36015.1| 77|Caenorhabditis elegans Small nuclear... 108 1e-23
Z69385-6|CAA93428.1| 104|Caenorhabditis elegans Hypothetical pr... 57 3e-08
AC025726-13|AAK73913.1| 77|Caenorhabditis elegans Lsm sm-like ... 49 8e-06
AC084197-12|AAL00875.1| 98|Caenorhabditis elegans Lsm sm-like ... 43 4e-04
Z69302-4|CAA93263.1| 125|Caenorhabditis elegans Hypothetical pr... 43 5e-04
Z98866-12|CAB11551.1| 90|Caenorhabditis elegans Hypothetical p... 40 0.004
Z81071-3|CAB03013.1| 91|Caenorhabditis elegans Hypothetical pr... 40 0.005
L14429-11|AAA28212.1| 85|Caenorhabditis elegans Small nuclear ... 39 0.007
AL132865-8|CAB60606.2| 102|Caenorhabditis elegans Hypothetical ... 34 0.19
Z92773-2|CAB07132.1| 160|Caenorhabditis elegans Hypothetical pr... 31 1.3
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 30 4.1
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 30 4.1
U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protei... 30 4.1
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 30 4.1
AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen prot... 30 4.1
Z79694-6|CAB01958.1| 316|Caenorhabditis elegans Hypothetical pr... 29 7.1
Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical pr... 29 7.1
Z46791-4|CAA86758.1| 317|Caenorhabditis elegans Hypothetical pr... 29 7.1
U23937-1|AAA65451.1| 71|Caenorhabditis elegans small nuclear r... 29 7.1
AL117204-26|CAB55132.1| 136|Caenorhabditis elegans Hypothetical... 29 7.1
Z82268-5|CAB05195.1| 304|Caenorhabditis elegans Hypothetical pr... 29 9.4
Z81138-4|CAB03474.1| 304|Caenorhabditis elegans Hypothetical pr... 29 9.4
Z81138-3|CAB63321.1| 304|Caenorhabditis elegans Hypothetical pr... 29 9.4
Z81138-1|CAB03475.1| 304|Caenorhabditis elegans Hypothetical pr... 29 9.4
Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical pr... 29 9.4
Z54238-5|CAA90997.1| 299|Caenorhabditis elegans Hypothetical pr... 29 9.4
Z54238-3|CAA90995.1| 299|Caenorhabditis elegans Hypothetical pr... 29 9.4
U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protei... 29 9.4
U20864-9|AAC46661.1| 123|Caenorhabditis elegans Lsm sm-like pro... 29 9.4
AY347576-1|AAP97870.1| 299|Caenorhabditis elegans COLlagen stru... 29 9.4
AY347574-1|AAP97868.1| 299|Caenorhabditis elegans COLlagen stru... 29 9.4
AC024775-6|AAK68452.2| 304|Caenorhabditis elegans Collagen prot... 29 9.4
>AF303264-1|AAG50222.1| 77|Caenorhabditis elegans SM protein G
protein.
Length = 77
Score = 108 bits (259), Expect = 1e-23
Identities = 46/76 (60%), Positives = 62/76 (81%)
Frame = +1
Query: 142 MSKAHPPXLKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMV 321
MSK HPP LKK+MDK++ +KLN R V+G+LRGFDPFMN+V+DE+VE KDG N+GM
Sbjct: 1 MSKTHPPELKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQKDGGSVNLGMT 60
Query: 322 VIRGNSIIMLESLDRL 369
VIRGNS++++E +R+
Sbjct: 61 VIRGNSVVIMEPKERI 76
>AC024201-5|AAF36015.1| 77|Caenorhabditis elegans Small nuclear
ribonucleoproteinprotein 7 protein.
Length = 77
Score = 108 bits (259), Expect = 1e-23
Identities = 46/76 (60%), Positives = 62/76 (81%)
Frame = +1
Query: 142 MSKAHPPXLKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMV 321
MSK HPP LKK+MDK++ +KLN R V+G+LRGFDPFMN+V+DE+VE KDG N+GM
Sbjct: 1 MSKTHPPELKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQKDGGSVNLGMT 60
Query: 322 VIRGNSIIMLESLDRL 369
VIRGNS++++E +R+
Sbjct: 61 VIRGNSVVIMEPKERI 76
>Z69385-6|CAA93428.1| 104|Caenorhabditis elegans Hypothetical
protein ZK593.7 protein.
Length = 104
Score = 56.8 bits (131), Expect = 3e-08
Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 8/76 (10%)
Frame = +1
Query: 166 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNV--------GMV 321
L +F+DK++ +K GR +GVLRGFD +N+VLD+ E +D Q +V G++
Sbjct: 16 LTRFLDKEIRVKFQGGREASGVLRGFDQLLNMVLDDCREYLRDPQNPSVVGDETRQLGLI 75
Query: 322 VIRGNSIIMLESLDRL 369
V RG +I ++ D L
Sbjct: 76 VARGTAITVVSPADGL 91
>AC025726-13|AAK73913.1| 77|Caenorhabditis elegans Lsm sm-like
protein protein 6 protein.
Length = 77
Score = 48.8 bits (111), Expect = 8e-06
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Frame = +1
Query: 142 MSKAHPPX--LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQ-RNNV 312
MSK P LKK + K + +KLN+G G+L D +MN+ L E EE +GQ +N
Sbjct: 1 MSKRQNPAEFLKKVIGKPVVVKLNSGVDYRGILACLDGYMNIAL-EQTEEYSNGQLQNKY 59
Query: 313 GMVVIRGNSIIMLES 357
G IRGN+++ + +
Sbjct: 60 GDAFIRGNNVLYIST 74
>AC084197-12|AAL00875.1| 98|Caenorhabditis elegans Lsm sm-like
protein protein 8 protein.
Length = 98
Score = 43.2 bits (97), Expect = 4e-04
Identities = 19/70 (27%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Frame = +1
Query: 166 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDE----SVEECKDGQRNNVGMVVIRG 333
L +M++ +++ GR + G+L+GFD +NLV+++ S E + +G+ +IRG
Sbjct: 5 LDAYMNRMVNVVTGDGRVIVGLLKGFDQLINLVIEDAHERSYSETEGVLTTPLGLYIIRG 64
Query: 334 NSIIMLESLD 363
++ ++ +D
Sbjct: 65 ENVAIIGEID 74
>Z69302-4|CAA93263.1| 125|Caenorhabditis elegans Hypothetical
protein F40F8.9 protein.
Length = 125
Score = 42.7 bits (96), Expect = 5e-04
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
Frame = +1
Query: 178 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEE-------CKDGQRNNVGMVVIRGN 336
+DKKL + L GR + G LR D F NL+L++ VE C+ GQ G ++IRG
Sbjct: 18 LDKKLLVVLRDGRKLIGFLRSIDQFANLILEDVVERTFVEKYFCETGQ----GFMLIRGE 73
Query: 337 SIIMLESLD 363
++ + +D
Sbjct: 74 NVELAGEID 82
>Z98866-12|CAB11551.1| 90|Caenorhabditis elegans Hypothetical
protein Y49E10.15 protein.
Length = 90
Score = 39.9 bits (89), Expect = 0.004
Identities = 17/45 (37%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Frame = +1
Query: 226 GVLRGFDPFMNLVLDESVE-ECKDGQRNNVGMVVIRGNSIIMLES 357
G + GFD FMN+V DE+ E K RN +G ++++G++I ++ +
Sbjct: 41 GYIIGFDEFMNVVFDEAEEVNMKTKGRNKIGRILLKGDNITLIHA 85
>Z81071-3|CAB03013.1| 91|Caenorhabditis elegans Hypothetical
protein F28F8.3 protein.
Length = 91
Score = 39.5 bits (88), Expect = 0.005
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Frame = +1
Query: 166 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESV--EECKDGQR-NNVGMVVIRGN 336
+ K + K+ + + + + G L GFD ++N+VL++ V E DG+R + +++ GN
Sbjct: 18 IDKCIGSKIWVIMKNDKEIVGTLTGFDDYVNMVLEDVVEYENTADGKRMTKLDTILLNGN 77
Query: 337 SIIML 351
I ML
Sbjct: 78 HITML 82
>L14429-11|AAA28212.1| 85|Caenorhabditis elegans Small nuclear
ribonucleoproteinprotein 5 protein.
Length = 85
Score = 39.1 bits (87), Expect = 0.007
Identities = 21/68 (30%), Positives = 33/68 (48%)
Frame = +1
Query: 160 PXLKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNS 339
P L K + KL G GVL D +MNL L + E + N+G ++IR N+
Sbjct: 11 PFLNSLTGKFVVCKLKWGMEYKGVLVAVDSYMNLQLAHAEEYIDGNSQGNLGEILIRCNN 70
Query: 340 IIMLESLD 363
++ + +D
Sbjct: 71 VLYVGGVD 78
>AL132865-8|CAB60606.2| 102|Caenorhabditis elegans Hypothetical
protein Y62E10A.12 protein.
Length = 102
Score = 34.3 bits (75), Expect = 0.19
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Frame = +1
Query: 127 KKHITMSKA--HPPXLKKF-MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEE 285
KK +T+S P L + +D+++ +K+ R + G LR FD +N+VL E VEE
Sbjct: 5 KKEVTLSATVEEPLDLLRLSLDERVYVKMRNDRELRGRLRAFDQHLNMVLSE-VEE 59
>Z92773-2|CAB07132.1| 160|Caenorhabditis elegans Hypothetical
protein W08E3.1 protein.
Length = 160
Score = 31.5 bits (68), Expect = 1.3
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 10/68 (14%)
Frame = +1
Query: 178 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECK---------DGQRNNV-GMVVI 327
++ ++ I L GR G + FD MN++L E E + DG+ + G+V++
Sbjct: 13 LNYRMKIILQDGRTFIGFFKAFDKHMNILLAECEEHRQIKPKAGKKTDGEEKRILGLVLV 72
Query: 328 RGNSIIML 351
RG I+ +
Sbjct: 73 RGEHIVSM 80
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical protein
F23H12.4 protein.
Length = 301
Score = 29.9 bits (64), Expect = 4.1
Identities = 13/37 (35%), Positives = 15/37 (40%)
Frame = -1
Query: 1264 GXPPXXPXGXXXPXPXEXXXXXXAGXPGXXGXXGNPG 1154
G PP P P P + G PG G G+PG
Sbjct: 132 GKPPVAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPG 168
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 29.9 bits (64), Expect = 4.1
Identities = 13/37 (35%), Positives = 15/37 (40%)
Frame = -1
Query: 1264 GXPPXXPXGXXXPXPXEXXXXXXAGXPGXXGXXGNPG 1154
G PP P P P + G PG G G+PG
Sbjct: 127 GKPPVAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPG 163
>U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protein 43
protein.
Length = 303
Score = 29.9 bits (64), Expect = 4.1
Identities = 13/37 (35%), Positives = 15/37 (40%)
Frame = -1
Query: 1264 GXPPXXPXGXXXPXPXEXXXXXXAGXPGXXGXXGNPG 1154
G PP P P P + G PG G G+PG
Sbjct: 134 GKPPTAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPG 170
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.elegans
(nematode)collagen 1 (col-1) gene, complete cds. ).
Length = 296
Score = 29.9 bits (64), Expect = 4.1
Identities = 13/37 (35%), Positives = 15/37 (40%)
Frame = -1
Query: 1264 GXPPXXPXGXXXPXPXEXXXXXXAGXPGXXGXXGNPG 1154
G PP P P P + G PG G G+PG
Sbjct: 127 GKPPVAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPG 163
>AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen protein.
Length = 303
Score = 29.9 bits (64), Expect = 4.1
Identities = 13/37 (35%), Positives = 15/37 (40%)
Frame = -1
Query: 1264 GXPPXXPXGXXXPXPXEXXXXXXAGXPGXXGXXGNPG 1154
G PP P P P + G PG G G+PG
Sbjct: 134 GKPPTAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPG 170
>Z79694-6|CAB01958.1| 316|Caenorhabditis elegans Hypothetical protein
C15A11.6 protein.
Length = 316
Score = 29.1 bits (62), Expect = 7.1
Identities = 15/43 (34%), Positives = 15/43 (34%)
Frame = -1
Query: 1282 GXXPPXGXPPXXPXGXXXPXPXEXXXXXXAGXPGXXGXXGNPG 1154
G P G P G P AG PG G GNPG
Sbjct: 151 GPKGPNGNPGAPAQGGGQGPPGPPGPAGSAGSPGQAGAPGNPG 193
>Z79694-5|CAB01961.1| 316|Caenorhabditis elegans Hypothetical protein
C15A11.5 protein.
Length = 316
Score = 29.1 bits (62), Expect = 7.1
Identities = 15/43 (34%), Positives = 15/43 (34%)
Frame = -1
Query: 1282 GXXPPXGXPPXXPXGXXXPXPXEXXXXXXAGXPGXXGXXGNPG 1154
G P G P G P AG PG G GNPG
Sbjct: 151 GPKGPNGNPGAPAQGGGQGPPGPPGPAGSAGSPGQAGAPGNPG 193
>Z46791-4|CAA86758.1| 317|Caenorhabditis elegans Hypothetical protein
C09G5.5 protein.
Length = 317
Score = 29.1 bits (62), Expect = 7.1
Identities = 15/43 (34%), Positives = 15/43 (34%)
Frame = -1
Query: 1282 GXXPPXGXPPXXPXGXXXPXPXEXXXXXXAGXPGXXGXXGNPG 1154
G P G P G P AG PG G GNPG
Sbjct: 149 GPQGPNGNPGAPAHGGGQGPPGPPGPAGDAGSPGQAGAPGNPG 191
>U23937-1|AAA65451.1| 71|Caenorhabditis elegans small nuclear
ribonucleoprotein protein.
Length = 71
Score = 29.1 bits (62), Expect = 7.1
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +1
Query: 190 LSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSI 342
++++ G G L + MN L E+V +DG+ + + V IRGN I
Sbjct: 5 VTLETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDGRSHQLDNVFIRGNKI 55
>AL117204-26|CAB55132.1| 136|Caenorhabditis elegans Hypothetical
protein Y116A8C.42 protein.
Length = 136
Score = 29.1 bits (62), Expect = 7.1
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +1
Query: 190 LSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSI 342
++++ G G L + MN L E+V +DG+ + + V IRGN I
Sbjct: 19 VTLETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDGRSHQLDNVFIRGNKI 69
>Z82268-5|CAB05195.1| 304|Caenorhabditis elegans Hypothetical protein
F52B11.4 protein.
Length = 304
Score = 28.7 bits (61), Expect = 9.4
Identities = 13/37 (35%), Positives = 15/37 (40%)
Frame = -1
Query: 1264 GXPPXXPXGXXXPXPXEXXXXXXAGXPGXXGXXGNPG 1154
G PP P P P + AG PG G G+ G
Sbjct: 135 GRPPAQPCEPITPPPCKPCPQGPAGAPGAPGPQGDAG 171
>Z81138-4|CAB03474.1| 304|Caenorhabditis elegans Hypothetical protein
W05B2.6 protein.
Length = 304
Score = 28.7 bits (61), Expect = 9.4
Identities = 13/37 (35%), Positives = 15/37 (40%)
Frame = -1
Query: 1264 GXPPXXPXGXXXPXPXEXXXXXXAGXPGXXGXXGNPG 1154
G PP P P P + AG PG G G+ G
Sbjct: 135 GRPPAQPCEPITPPPCKPCPQGPAGAPGAPGPQGDAG 171
>Z81138-3|CAB63321.1| 304|Caenorhabditis elegans Hypothetical protein
W05B2.5 protein.
Length = 304
Score = 28.7 bits (61), Expect = 9.4
Identities = 13/37 (35%), Positives = 15/37 (40%)
Frame = -1
Query: 1264 GXPPXXPXGXXXPXPXEXXXXXXAGXPGXXGXXGNPG 1154
G PP P P P + AG PG G G+ G
Sbjct: 135 GRPPAQPCEPITPPPCKPCPQGPAGAPGAPGPQGDAG 171
>Z81138-1|CAB03475.1| 304|Caenorhabditis elegans Hypothetical protein
W05B2.1 protein.
Length = 304
Score = 28.7 bits (61), Expect = 9.4
Identities = 13/37 (35%), Positives = 15/37 (40%)
Frame = -1
Query: 1264 GXPPXXPXGXXXPXPXEXXXXXXAGXPGXXGXXGNPG 1154
G PP P P P + AG PG G G+ G
Sbjct: 135 GRPPAQPCEPITPPPCKPCPQGPAGAPGAPGPQGDAG 171
>Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical protein
C29F4.1 protein.
Length = 299
Score = 28.7 bits (61), Expect = 9.4
Identities = 13/37 (35%), Positives = 15/37 (40%)
Frame = -1
Query: 1264 GXPPXXPXGXXXPXPXEXXXXXXAGXPGXXGXXGNPG 1154
G PP P P P + AG PG G G+ G
Sbjct: 130 GRPPQQPCEPITPPPCKPCPAGPAGAPGPAGPAGDAG 166
>Z54238-5|CAA90997.1| 299|Caenorhabditis elegans Hypothetical protein
T28C6.6 protein.
Length = 299
Score = 28.7 bits (61), Expect = 9.4
Identities = 13/37 (35%), Positives = 15/37 (40%)
Frame = -1
Query: 1264 GXPPXXPXGXXXPXPXEXXXXXXAGXPGXXGXXGNPG 1154
G PP P P P + AG PG G G+ G
Sbjct: 130 GRPPQQPCEPITPPPCKPCPAGPAGAPGPAGPAGDAG 166
>Z54238-3|CAA90995.1| 299|Caenorhabditis elegans Hypothetical protein
T28C6.4 protein.
Length = 299
Score = 28.7 bits (61), Expect = 9.4
Identities = 13/37 (35%), Positives = 15/37 (40%)
Frame = -1
Query: 1264 GXPPXXPXGXXXPXPXEXXXXXXAGXPGXXGXXGNPG 1154
G PP P P P + AG PG G G+ G
Sbjct: 130 GRPPQQPCEPITPPPCKPCPAGPAGAPGPAGPAGDAG 166
>U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protein 33
protein.
Length = 304
Score = 28.7 bits (61), Expect = 9.4
Identities = 13/37 (35%), Positives = 15/37 (40%)
Frame = -1
Query: 1264 GXPPXXPXGXXXPXPXEXXXXXXAGXPGXXGXXGNPG 1154
G PP P P P + AG PG G G+ G
Sbjct: 135 GKPPVQPCEPITPPPCKPCPDGPAGPPGPPGAPGDAG 171
>U20864-9|AAC46661.1| 123|Caenorhabditis elegans Lsm sm-like
protein protein 4 protein.
Length = 123
Score = 28.7 bits (61), Expect = 9.4
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +1
Query: 166 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQR-NNVGMVVIRGNSI 342
LK + + ++L G G L+ D +MN+ L + + KDG + + +RG++I
Sbjct: 8 LKTAQNHPMLVELKNGETYNGHLKACDSWMNIHLVDVIFTSKDGDKFFKMSEAYVRGSTI 67
>AY347576-1|AAP97870.1| 299|Caenorhabditis elegans COLlagen
structural gene, probablecuticle component, from embryo
to adult (28.7 kD) (col-3) protein.
Length = 299
Score = 28.7 bits (61), Expect = 9.4
Identities = 13/37 (35%), Positives = 15/37 (40%)
Frame = -1
Query: 1264 GXPPXXPXGXXXPXPXEXXXXXXAGXPGXXGXXGNPG 1154
G PP P P P + AG PG G G+ G
Sbjct: 130 GRPPQQPCEPITPPPCKPCPAGPAGAPGPAGPAGDAG 166
>AY347574-1|AAP97868.1| 299|Caenorhabditis elegans COLlagen
structural gene, probablecuticle component, from embryo
to adult (28.7 kD) (col-117) protein.
Length = 299
Score = 28.7 bits (61), Expect = 9.4
Identities = 13/37 (35%), Positives = 15/37 (40%)
Frame = -1
Query: 1264 GXPPXXPXGXXXPXPXEXXXXXXAGXPGXXGXXGNPG 1154
G PP P P P + AG PG G G+ G
Sbjct: 130 GRPPQQPCEPITPPPCKPCPAGPAGAPGPAGPAGDAG 166
>AC024775-6|AAK68452.2| 304|Caenorhabditis elegans Collagen protein
108 protein.
Length = 304
Score = 28.7 bits (61), Expect = 9.4
Identities = 13/37 (35%), Positives = 15/37 (40%)
Frame = -1
Query: 1264 GXPPXXPXGXXXPXPXEXXXXXXAGXPGXXGXXGNPG 1154
G PP P P P + AG PG G G+ G
Sbjct: 135 GRPPQQPCEPITPPPCKPCPQGPAGPPGPPGPAGDAG 171
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,789,137
Number of Sequences: 27780
Number of extensions: 368181
Number of successful extensions: 1324
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1303
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3579019094
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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