Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_H17
(1304 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo... 52 2e-07
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 31 0.26
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 31 0.46
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 30 0.81
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2... 29 1.1
SPBC530.01 |gyp1||GTPase activating protein Gyp1 |Schizosaccharo... 29 1.4
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei... 29 1.4
SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 29 1.9
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p... 29 1.9
SPBC25B2.04c |||mitochondrial ribosome assembly protein|Schizosa... 27 4.3
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc... 27 4.3
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun... 27 7.5
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa... 26 10.0
SPBC1289.14 ||SPBC8E4.10c|adducin|Schizosaccharomyces pombe|chr ... 26 10.0
>SPAC3F10.16c |||GTP binding protein,
HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 616
Score = 51.6 bits (118), Expect = 2e-07
Identities = 22/45 (48%), Positives = 30/45 (66%)
Frame = -3
Query: 162 QVSVSSMPGHTRHIQSLILDNDIELLDCPGLVLPAYAVAPRFXIL 28
+VSVSS PG T+H Q++ L + LLDCPGLV P++A +L
Sbjct: 326 KVSVSSTPGKTKHFQTINLSEKVSLLDCPGLVFPSFATTQADLVL 370
Score = 26.2 bits (55), Expect = 10.0
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -2
Query: 250 RLNLQSVTAESSLQEFLSTAVL 185
R L+SVT E+ L EFL+TA L
Sbjct: 43 RAALRSVTHETDLDEFLNTAEL 64
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 31.5 bits (68), Expect = 0.26
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = -3
Query: 156 SVSSMPGHTRHIQSLILDNDIELLDCPGLVLPA 58
+V+ +PG T+ Q + L I L+DCPG+V P+
Sbjct: 337 NVAPIPGETKVWQYVALMKRIFLIDCPGIVPPS 369
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 30.7 bits (66), Expect = 0.46
Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 4/98 (4%)
Frame = +2
Query: 317 EKEDASESETEILDSQDGEDHSHVHFSVDTSYKVKCEKD---EGASCYCSASHTENYCST 487
E E +SE S D E S S +S E + EG+ S+S +E+ S+
Sbjct: 172 ESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSS 231
Query: 488 DEHDPTQIHGISNALQPS-DSGADLTYQDYHSDYISHD 598
+++D + S + S DS + + D S+ S D
Sbjct: 232 EDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSKD 269
Score = 29.9 bits (64), Expect = 0.81
Identities = 29/119 (24%), Positives = 45/119 (37%), Gaps = 3/119 (2%)
Frame = +2
Query: 317 EKEDASESETEILDSQDGEDHSHVHFSVDTSYKVKCEKD---EGASCYCSASHTENYCST 487
E E +SE S D E S S +S E + EG+ S+S +E+ S+
Sbjct: 118 ESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSS 177
Query: 488 DEHDPTQIHGISNALQPSDSGADLTYQDYHSDYISHDKLEQLDHDTEALIENENYLSED 664
+++D + S+ + S D SD S E D + + SED
Sbjct: 178 EDNDSS---SSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSED 233
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 29.9 bits (64), Expect = 0.81
Identities = 20/68 (29%), Positives = 30/68 (44%)
Frame = +2
Query: 668 WEKFWAIHGERLIWASWIKKYSNYINPAFLNENNDLTMDENGVPTQHSEDIYKENIENTP 847
W + + + + ++I Y Y + AF N NND + G QH + +K N P
Sbjct: 233 WTRVQQLDPKNTVVDTYIGLY--YYDLAFQNVNNDSFVQNYGKALQHIQRAFKTR-NNDP 289
Query: 848 GADDIRER 871
A I ER
Sbjct: 290 VASSILER 297
>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 29.5 bits (63), Expect = 1.1
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -3
Query: 147 SMPGHTRHIQSLILDNDIELLDCPGLVLPA 58
++ G T ++ + LDN + L+D PG+V P+
Sbjct: 305 NVAGMTTSLREVKLDNKLRLVDSPGIVFPS 334
>SPBC530.01 |gyp1||GTPase activating protein Gyp1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 29.1 bits (62), Expect = 1.4
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = +2
Query: 713 SWIKKYSNYINPAFLNENNDLTMDENGVPTQHSEDIYKENIENTPGADDIRERKF-HMIQ 889
S IKK+S ++ ++ N T+ NG+P++H ++K + P RE
Sbjct: 190 SRIKKFSRILDAPIVDLNALRTLAWNGIPSEHRPIVWKYLLGYLPCNASRREVTLKRKRD 249
Query: 890 K*SIQKKQCY*KSTEKTP 943
+ + K C+ +TE P
Sbjct: 250 EYNAAKDSCFNTNTEPPP 267
>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1462
Score = 29.1 bits (62), Expect = 1.4
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = +3
Query: 420 SVRKTKAPAVIVALLTLKTTVQLMSMIQLKFMVFQMLYNL 539
SV KT P +++ALL+L+TT+ ++ +K M + N+
Sbjct: 321 SVLKTLLPGILLALLSLRTTLSSSAIQLIKEMAIILKSNI 360
>SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 105
Score = 28.7 bits (61), Expect = 1.9
Identities = 14/47 (29%), Positives = 29/47 (61%)
Frame = -2
Query: 928 TFSIALFFLYGLLLNHMKFSLTYVISSRGVLYIFFVYIL*VLCWYTI 788
TFS+ +F++ +++ H+K + Y+IS+ L + Y+L +L + I
Sbjct: 47 TFSLIVFYILIMIIQHLK-EIHYLISASAKLLLASNYLLELLISHNI 92
>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 595
Score = 28.7 bits (61), Expect = 1.9
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +3
Query: 135 DQALSSRLPEIRKYC-YASTAVERNSWSEDSAVTD*RFRRPQSYPSF 272
D S R P ++KY Y T V+ N+W EDS + + SY S+
Sbjct: 398 DVLASYRQPLVQKYTFYTRTPVDLNAWVEDSLALNIDTTQFPSYLSY 444
>SPBC25B2.04c |||mitochondrial ribosome assembly
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 328
Score = 27.5 bits (58), Expect = 4.3
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Frame = -3
Query: 153 VSSMPGHTRHIQSLIL---DNDIELLDCPGLVLPA 58
V + PG T+ I ++ D D+ +LD PG++ P+
Sbjct: 178 VGNYPGVTKRISEIVRLFNDMDVYMLDTPGIMTPS 212
>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 791
Score = 27.5 bits (58), Expect = 4.3
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Frame = +2
Query: 722 KKYSNYINPAFLNENNDLTMDENGVPTQ-HSEDIYKENIENTPG--ADDIRERKFHMIQK 892
K ++ ++ L L ++E + + + +D+YK I N P +D +R F ++
Sbjct: 321 KDFNLHVKQLGLLHKPSLDLEEGYIMDENYGKDVYKHGISNVPDDENEDDLQRYFTALEM 380
Query: 893 *SIQKKQCY*KSTEKTP 943
QK+Q + KS K P
Sbjct: 381 QQDQKEQ-HKKSKNKDP 396
>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
Alg2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 511
Score = 26.6 bits (56), Expect = 7.5
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -2
Query: 976 GXW*PLVVFN*RSLFCTFSIALFFLYGLLLNHMKFSLTYV 857
G W P +F S+FC+ ++ LL N+M F V
Sbjct: 76 GDWLPSSIFGRLSIFCSSLRQVYLTMILLTNYMHFDAIIV 115
>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
Trk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 841
Score = 26.2 bits (55), Expect = 10.0
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 10/76 (13%)
Frame = +2
Query: 455 SASHTENYCSTDEHDPTQIHGISNALQPSDSGADLTYQDYHSDYISHDKLEQLD------ 616
S + +N+ D HD T + P AD++ +Y Y+ K + LD
Sbjct: 158 SPTSLKNFSRFDTHDSTNNPYFPD--NPPSPKADISKDEYFGKYLPK-KSDTLDMDLESH 214
Query: 617 ----HDTEALIENENY 652
HD E IEN+NY
Sbjct: 215 NMTFHDYEPSIENKNY 230
>SPBC1289.14 ||SPBC8E4.10c|adducin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 324
Score = 26.2 bits (55), Expect = 10.0
Identities = 11/37 (29%), Positives = 15/37 (40%)
Frame = +2
Query: 512 HGISNALQPSDSGADLTYQDYHSDYISHDKLEQLDHD 622
HG Q S +TY DYH + + + L D
Sbjct: 190 HGFLELAQTSHQSGPVTYHDYHGIVVDKGEQKSLAED 226
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,696,606
Number of Sequences: 5004
Number of extensions: 99752
Number of successful extensions: 296
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 296
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 713396902
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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