Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_H17
(1304 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC068500-1|AAH68500.1| 658|Homo sapiens large subunit GTPase 1 ... 64 8e-10
BC040119-1|AAH40119.1| 649|Homo sapiens LSG1 protein protein. 64 8e-10
BC015042-1|AAH15042.1| 648|Homo sapiens Unknown (protein for IM... 64 8e-10
AK002163-1|BAA92116.1| 642|Homo sapiens protein ( Homo sapiens ... 64 8e-10
L25665-1|AAA66492.1| 430|Homo sapiens GTP-binding protein protein. 46 4e-04
BX248518-2|CAM26012.1| 607|Homo sapiens guanine nucleotide bind... 46 4e-04
BX000357-2|CAI18558.1| 607|Homo sapiens guanine nucleotide bind... 46 4e-04
BT006648-1|AAP35294.1| 607|Homo sapiens guanine nucleotide bind... 46 4e-04
BC063657-1|AAH63657.1| 481|Homo sapiens GNL1 protein protein. 46 4e-04
BC018366-1|AAH18366.1| 607|Homo sapiens guanine nucleotide bind... 46 4e-04
BC013959-1|AAH13959.1| 607|Homo sapiens guanine nucleotide bind... 46 4e-04
BA000025-77|BAB63327.1| 421|Homo sapiens GTP-binding protein pr... 46 4e-04
AL662825-2|CAI17831.1| 607|Homo sapiens guanine nucleotide bind... 46 4e-04
AL662800-2|CAI18152.1| 607|Homo sapiens guanine nucleotide bind... 46 4e-04
AB202092-2|BAE78611.1| 421|Homo sapiens guanine nucleotide bind... 46 4e-04
AB103601-2|BAF31262.1| 545|Homo sapiens HSR1 protein protein. 46 4e-04
AB088095-2|BAC54927.1| 374|Homo sapiens guanine nucleotide bind... 46 4e-04
BC011720-1|AAH11720.1| 582|Homo sapiens GNL3L protein protein. 35 0.75
BC003603-1|AAH03603.1| 575|Homo sapiens Unknown (protein for IM... 35 0.75
AL391139-1|CAI40396.1| 582|Homo sapiens guanine nucleotide bind... 35 0.75
AK001475-1|BAA91712.1| 582|Homo sapiens protein ( Homo sapiens ... 35 0.75
AY028423-1|AAK27730.1| 852|Homo sapiens PRIP-interacting protei... 34 0.99
AF432215-1|AAL99922.1| 853|Homo sapiens CLL-associated antigen ... 34 0.99
AF286340-1|AAK83025.1| 853|Homo sapiens hepatocellular carcinom... 34 0.99
U05237-1|AAA97522.1| 810|Homo sapiens FAC1 protein. 33 3.0
AY282495-1|AAP22284.1| 2764|Homo sapiens bromodomain PHD finger ... 33 3.0
AB032251-1|BAA89208.1| 2781|Homo sapiens bromodomain PHD finger ... 33 3.0
BC112227-1|AAI12228.1| 154|Homo sapiens FLJ12595 protein protein. 32 4.0
BC093802-1|AAH93802.1| 154|Homo sapiens FLJ12595 protein protein. 32 4.0
AK022657-1|BAB14161.1| 148|Homo sapiens protein ( Homo sapiens ... 32 4.0
>BC068500-1|AAH68500.1| 658|Homo sapiens large subunit GTPase 1
homolog (S. cerevisiae) protein.
Length = 658
Score = 64.5 bits (150), Expect = 8e-10
Identities = 28/36 (77%), Positives = 33/36 (91%)
Frame = -2
Query: 289 LHTTEVNDGYDWGRLNLQSVTAESSLQEFLSTAVLA 182
LHT+E+NDGYDWGRLNLQSVT +SSL +FL+TA LA
Sbjct: 34 LHTSELNDGYDWGRLNLQSVTEQSSLDDFLATAELA 69
Score = 49.2 bits (112), Expect = 3e-05
Identities = 19/36 (52%), Positives = 29/36 (80%)
Frame = -3
Query: 162 QVSVSSMPGHTRHIQSLILDNDIELLDCPGLVLPAY 55
+VSVS+ PGHT+H Q+L ++ + L DCPGLV+P++
Sbjct: 411 KVSVSATPGHTKHFQTLYVEPGLCLCDCPGLVMPSF 446
>BC040119-1|AAH40119.1| 649|Homo sapiens LSG1 protein protein.
Length = 649
Score = 64.5 bits (150), Expect = 8e-10
Identities = 28/36 (77%), Positives = 33/36 (91%)
Frame = -2
Query: 289 LHTTEVNDGYDWGRLNLQSVTAESSLQEFLSTAVLA 182
LHT+E+NDGYDWGRLNLQSVT +SSL +FL+TA LA
Sbjct: 34 LHTSELNDGYDWGRLNLQSVTEQSSLDDFLATAELA 69
Score = 49.2 bits (112), Expect = 3e-05
Identities = 19/36 (52%), Positives = 29/36 (80%)
Frame = -3
Query: 162 QVSVSSMPGHTRHIQSLILDNDIELLDCPGLVLPAY 55
+VSVS+ PGHT+H Q+L ++ + L DCPGLV+P++
Sbjct: 411 KVSVSATPGHTKHFQTLYVEPGLCLCDCPGLVMPSF 446
>BC015042-1|AAH15042.1| 648|Homo sapiens Unknown (protein for
IMAGE:3920630) protein.
Length = 648
Score = 64.5 bits (150), Expect = 8e-10
Identities = 28/36 (77%), Positives = 33/36 (91%)
Frame = -2
Query: 289 LHTTEVNDGYDWGRLNLQSVTAESSLQEFLSTAVLA 182
LHT+E+NDGYDWGRLNLQSVT +SSL +FL+TA LA
Sbjct: 34 LHTSELNDGYDWGRLNLQSVTEQSSLDDFLATAELA 69
Score = 49.2 bits (112), Expect = 3e-05
Identities = 19/36 (52%), Positives = 29/36 (80%)
Frame = -3
Query: 162 QVSVSSMPGHTRHIQSLILDNDIELLDCPGLVLPAY 55
+VSVS+ PGHT+H Q+L ++ + L DCPGLV+P++
Sbjct: 411 KVSVSATPGHTKHFQTLYVEPGLCLCDCPGLVMPSF 446
>AK002163-1|BAA92116.1| 642|Homo sapiens protein ( Homo sapiens
cDNA FLJ11301 fis, clone PLACE1009908, weakly similar to
HYPOTHETICAL GTP-BINDING PROTEIN IN SEH1-PRP20
INTERGENIC ).
Length = 642
Score = 64.5 bits (150), Expect = 8e-10
Identities = 28/36 (77%), Positives = 33/36 (91%)
Frame = -2
Query: 289 LHTTEVNDGYDWGRLNLQSVTAESSLQEFLSTAVLA 182
LHT+E+NDGYDWGRLNLQSVT +SSL +FL+TA LA
Sbjct: 34 LHTSELNDGYDWGRLNLQSVTEQSSLDDFLATAELA 69
Score = 49.2 bits (112), Expect = 3e-05
Identities = 19/36 (52%), Positives = 29/36 (80%)
Frame = -3
Query: 162 QVSVSSMPGHTRHIQSLILDNDIELLDCPGLVLPAY 55
+VSVS+ PGHT+H Q+L ++ + L DCPGLV+P++
Sbjct: 411 KVSVSATPGHTKHFQTLYVEPGLCLCDCPGLVMPSF 446
>L25665-1|AAA66492.1| 430|Homo sapiens GTP-binding protein protein.
Length = 430
Score = 45.6 bits (103), Expect = 4e-04
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = -3
Query: 159 VSVSSMPGHTRHIQSLILDNDIELLDCPGLVLPA 58
VSVS PGHTR+ Q+ L ++L DCPGL+ P+
Sbjct: 209 VSVSRTPGHTRYFQTYFLTPSVKLCDCPGLIFPS 242
>BX248518-2|CAM26012.1| 607|Homo sapiens guanine nucleotide binding
protein-like 1 protein.
Length = 607
Score = 45.6 bits (103), Expect = 4e-04
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = -3
Query: 159 VSVSSMPGHTRHIQSLILDNDIELLDCPGLVLPA 58
VSVS PGHTR+ Q+ L ++L DCPGL+ P+
Sbjct: 386 VSVSRTPGHTRYFQTYFLTPSVKLCDCPGLIFPS 419
>BX000357-2|CAI18558.1| 607|Homo sapiens guanine nucleotide binding
protein-like 1 protein.
Length = 607
Score = 45.6 bits (103), Expect = 4e-04
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = -3
Query: 159 VSVSSMPGHTRHIQSLILDNDIELLDCPGLVLPA 58
VSVS PGHTR+ Q+ L ++L DCPGL+ P+
Sbjct: 386 VSVSRTPGHTRYFQTYFLTPSVKLCDCPGLIFPS 419
>BT006648-1|AAP35294.1| 607|Homo sapiens guanine nucleotide binding
protein-like 1 protein.
Length = 607
Score = 45.6 bits (103), Expect = 4e-04
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = -3
Query: 159 VSVSSMPGHTRHIQSLILDNDIELLDCPGLVLPA 58
VSVS PGHTR+ Q+ L ++L DCPGL+ P+
Sbjct: 386 VSVSRTPGHTRYFQTYFLTPSVKLCDCPGLIFPS 419
>BC063657-1|AAH63657.1| 481|Homo sapiens GNL1 protein protein.
Length = 481
Score = 45.6 bits (103), Expect = 4e-04
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = -3
Query: 159 VSVSSMPGHTRHIQSLILDNDIELLDCPGLVLPA 58
VSVS PGHTR+ Q+ L ++L DCPGL+ P+
Sbjct: 260 VSVSRTPGHTRYFQTYFLTPSVKLCDCPGLIFPS 293
>BC018366-1|AAH18366.1| 607|Homo sapiens guanine nucleotide binding
protein-like 1 protein.
Length = 607
Score = 45.6 bits (103), Expect = 4e-04
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = -3
Query: 159 VSVSSMPGHTRHIQSLILDNDIELLDCPGLVLPA 58
VSVS PGHTR+ Q+ L ++L DCPGL+ P+
Sbjct: 386 VSVSRTPGHTRYFQTYFLTPSVKLCDCPGLIFPS 419
>BC013959-1|AAH13959.1| 607|Homo sapiens guanine nucleotide binding
protein-like 1 protein.
Length = 607
Score = 45.6 bits (103), Expect = 4e-04
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = -3
Query: 159 VSVSSMPGHTRHIQSLILDNDIELLDCPGLVLPA 58
VSVS PGHTR+ Q+ L ++L DCPGL+ P+
Sbjct: 386 VSVSRTPGHTRYFQTYFLTPSVKLCDCPGLIFPS 419
>BA000025-77|BAB63327.1| 421|Homo sapiens GTP-binding protein
protein.
Length = 421
Score = 45.6 bits (103), Expect = 4e-04
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = -3
Query: 159 VSVSSMPGHTRHIQSLILDNDIELLDCPGLVLPA 58
VSVS PGHTR+ Q+ L ++L DCPGL+ P+
Sbjct: 200 VSVSRTPGHTRYFQTYFLTPSVKLCDCPGLIFPS 233
>AL662825-2|CAI17831.1| 607|Homo sapiens guanine nucleotide binding
protein-like 1 protein.
Length = 607
Score = 45.6 bits (103), Expect = 4e-04
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = -3
Query: 159 VSVSSMPGHTRHIQSLILDNDIELLDCPGLVLPA 58
VSVS PGHTR+ Q+ L ++L DCPGL+ P+
Sbjct: 386 VSVSRTPGHTRYFQTYFLTPSVKLCDCPGLIFPS 419
>AL662800-2|CAI18152.1| 607|Homo sapiens guanine nucleotide binding
protein-like 1 protein.
Length = 607
Score = 45.6 bits (103), Expect = 4e-04
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = -3
Query: 159 VSVSSMPGHTRHIQSLILDNDIELLDCPGLVLPA 58
VSVS PGHTR+ Q+ L ++L DCPGL+ P+
Sbjct: 386 VSVSRTPGHTRYFQTYFLTPSVKLCDCPGLIFPS 419
>AB202092-2|BAE78611.1| 421|Homo sapiens guanine nucleotide binding
protein-like 1 protein.
Length = 421
Score = 45.6 bits (103), Expect = 4e-04
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = -3
Query: 159 VSVSSMPGHTRHIQSLILDNDIELLDCPGLVLPA 58
VSVS PGHTR+ Q+ L ++L DCPGL+ P+
Sbjct: 200 VSVSRTPGHTRYFQTYFLTPSVKLCDCPGLIFPS 233
>AB103601-2|BAF31262.1| 545|Homo sapiens HSR1 protein protein.
Length = 545
Score = 45.6 bits (103), Expect = 4e-04
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = -3
Query: 159 VSVSSMPGHTRHIQSLILDNDIELLDCPGLVLPA 58
VSVS PGHTR+ Q+ L ++L DCPGL+ P+
Sbjct: 371 VSVSRTPGHTRYFQTYFLTPSVKLCDCPGLIFPS 404
>AB088095-2|BAC54927.1| 374|Homo sapiens guanine nucleotide binding
protein-like 1 protein.
Length = 374
Score = 45.6 bits (103), Expect = 4e-04
Identities = 18/34 (52%), Positives = 24/34 (70%)
Frame = -3
Query: 159 VSVSSMPGHTRHIQSLILDNDIELLDCPGLVLPA 58
VSVS PGHTR+ Q+ L ++L DCPGL+ P+
Sbjct: 200 VSVSRTPGHTRYFQTYFLTPSVKLCDCPGLIFPS 233
>BC011720-1|AAH11720.1| 582|Homo sapiens GNL3L protein protein.
Length = 582
Score = 34.7 bits (76), Expect = 0.75
Identities = 15/30 (50%), Positives = 21/30 (70%)
Frame = -3
Query: 156 SVSSMPGHTRHIQSLILDNDIELLDCPGLV 67
SV ++PG T+ +Q + LD I LLD PG+V
Sbjct: 279 SVGAVPGITKFMQEVYLDKFIRLLDAPGIV 308
>BC003603-1|AAH03603.1| 575|Homo sapiens Unknown (protein for
IMAGE:3543897) protein.
Length = 575
Score = 34.7 bits (76), Expect = 0.75
Identities = 15/30 (50%), Positives = 21/30 (70%)
Frame = -3
Query: 156 SVSSMPGHTRHIQSLILDNDIELLDCPGLV 67
SV ++PG T+ +Q + LD I LLD PG+V
Sbjct: 279 SVGAVPGITKFMQEVYLDKFIRLLDAPGIV 308
>AL391139-1|CAI40396.1| 582|Homo sapiens guanine nucleotide binding
protein-like 3 (nucleolar)-like protein.
Length = 582
Score = 34.7 bits (76), Expect = 0.75
Identities = 15/30 (50%), Positives = 21/30 (70%)
Frame = -3
Query: 156 SVSSMPGHTRHIQSLILDNDIELLDCPGLV 67
SV ++PG T+ +Q + LD I LLD PG+V
Sbjct: 279 SVGAVPGITKFMQEVYLDKFIRLLDAPGIV 308
>AK001475-1|BAA91712.1| 582|Homo sapiens protein ( Homo sapiens
cDNA FLJ10613 fis, clone NT2RP2005393, weakly similar to
AUTOANTIGEN NGP-1. ).
Length = 582
Score = 34.7 bits (76), Expect = 0.75
Identities = 15/30 (50%), Positives = 21/30 (70%)
Frame = -3
Query: 156 SVSSMPGHTRHIQSLILDNDIELLDCPGLV 67
SV ++PG T+ +Q + LD I LLD PG+V
Sbjct: 279 SVGAVPGITKFMQEVYLDKFIRLLDAPGIV 308
>AY028423-1|AAK27730.1| 852|Homo sapiens PRIP-interacting protein
PIPMT protein.
Length = 852
Score = 34.3 bits (75), Expect = 0.99
Identities = 33/143 (23%), Positives = 59/143 (41%), Gaps = 7/143 (4%)
Frame = +2
Query: 323 EDASESETEILDS-----QDGEDHSHVHF--SVDTSYKVKCEKDEGASCYCSASHTENYC 481
E +SE E++ S Q G +H F S++T KVK +K + Y E++
Sbjct: 84 ESELDSEAELMRSMGLPLQFGRITAHKDFEVSMNTRNKVKIKKKKHQKKYLDEIVQESWR 143
Query: 482 STDEHDPTQIHGISNALQPSDSGADLTYQDYHSDYISHDKLEQLDHDTEALIENENYLSE 661
E D + L D + Y++ + + K + ++ +
Sbjct: 144 KEYEED--------DILASDDPSSIEQYENTRTYELQSKKDTETENPPVENTLSPKLEIT 195
Query: 662 DTWEKFWAIHGERLIWASWIKKY 730
+ WEK+W +G L+W SW +K+
Sbjct: 196 EKWEKYWNEYGGGLLWQSWQEKH 218
>AF432215-1|AAL99922.1| 853|Homo sapiens CLL-associated antigen
KW-2 protein.
Length = 853
Score = 34.3 bits (75), Expect = 0.99
Identities = 33/143 (23%), Positives = 59/143 (41%), Gaps = 7/143 (4%)
Frame = +2
Query: 323 EDASESETEILDS-----QDGEDHSHVHF--SVDTSYKVKCEKDEGASCYCSASHTENYC 481
E +SE E++ S Q G +H F S++T KVK +K + Y E++
Sbjct: 84 ESELDSEAELMRSMGLPLQFGRITAHKDFEVSMNTRNKVKIKKKKHQKKYLDEIVQESWR 143
Query: 482 STDEHDPTQIHGISNALQPSDSGADLTYQDYHSDYISHDKLEQLDHDTEALIENENYLSE 661
E D + L D + Y++ + + K + ++ +
Sbjct: 144 KEYEED--------DILASDDPSSIEQYENTRTYELQSKKDTETENPPVENTLSPKLEIT 195
Query: 662 DTWEKFWAIHGERLIWASWIKKY 730
+ WEK+W +G L+W SW +K+
Sbjct: 196 EKWEKYWNEYGGGLLWQSWQEKH 218
>AF286340-1|AAK83025.1| 853|Homo sapiens hepatocellular
carcinoma-associated antigen 137 protein.
Length = 853
Score = 34.3 bits (75), Expect = 0.99
Identities = 33/143 (23%), Positives = 59/143 (41%), Gaps = 7/143 (4%)
Frame = +2
Query: 323 EDASESETEILDS-----QDGEDHSHVHF--SVDTSYKVKCEKDEGASCYCSASHTENYC 481
E +SE E++ S Q G +H F S++T KVK +K + Y E++
Sbjct: 84 ESELDSEAELMRSMGLPLQFGRITAHKDFEVSMNTRNKVKIKKKKHQKKYLDEIVQESWR 143
Query: 482 STDEHDPTQIHGISNALQPSDSGADLTYQDYHSDYISHDKLEQLDHDTEALIENENYLSE 661
E D + L D + Y++ + + K + ++ +
Sbjct: 144 KEYEED--------DILASDDPSSIEQYENTRTYELQSKKDTETENPPVENTLSPKLEIT 195
Query: 662 DTWEKFWAIHGERLIWASWIKKY 730
+ WEK+W +G L+W SW +K+
Sbjct: 196 EKWEKYWNEYGGGLLWQSWQEKH 218
>U05237-1|AAA97522.1| 810|Homo sapiens FAC1 protein.
Length = 810
Score = 32.7 bits (71), Expect = 3.0
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Frame = +2
Query: 317 EKEDASESETEILDSQDGEDHSHVHFSVDTSYKVKCEKDEGASCYCSASHTEN---YCST 487
E+ED ET+ DS+D E+ D+ Y + E D+ + YC+ S + Y ST
Sbjct: 7 EEEDGDAEETQ--DSEDDEEDEMEEDDDDSDYPEEMEDDDDDASYCTESSFRSHSTYSST 64
Query: 488 DEHDPTQIH 514
++H
Sbjct: 65 PGRRKPRVH 73
>AY282495-1|AAP22284.1| 2764|Homo sapiens bromodomain PHD finger
transcription factor protein.
Length = 2764
Score = 32.7 bits (71), Expect = 3.0
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Frame = +2
Query: 317 EKEDASESETEILDSQDGEDHSHVHFSVDTSYKVKCEKDEGASCYCSASHTEN---YCST 487
E+ED ET+ DS+D E+ D+ Y + E D+ + YC+ S + Y ST
Sbjct: 7 EEEDGDAEETQ--DSEDDEEDEMEEDDDDSDYPEEMEDDDDDASYCTESSFRSHSTYSST 64
Query: 488 DEHDPTQIH 514
++H
Sbjct: 65 PGRRKPRVH 73
>AB032251-1|BAA89208.1| 2781|Homo sapiens bromodomain PHD finger
transcription factor protein.
Length = 2781
Score = 32.7 bits (71), Expect = 3.0
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Frame = +2
Query: 317 EKEDASESETEILDSQDGEDHSHVHFSVDTSYKVKCEKDEGASCYCSASHTEN---YCST 487
E+ED ET+ DS+D E+ D+ Y + E D+ + YC+ S + Y ST
Sbjct: 7 EEEDGDAEETQ--DSEDDEEDEMEEDDDDSDYPEEMEDDDDDASYCTESSFRSHSTYSST 64
Query: 488 DEHDPTQIH 514
++H
Sbjct: 65 PGRRKPRVH 73
>BC112227-1|AAI12228.1| 154|Homo sapiens FLJ12595 protein protein.
Length = 154
Score = 32.3 bits (70), Expect = 4.0
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = -3
Query: 156 SVSSMPGHTRHIQSLILDNDIELLDCPGLV 67
SV ++PG T+ +Q + LD I LLD P +V
Sbjct: 108 SVGAIPGVTKFMQEVYLDKFIRLLDAPAIV 137
>BC093802-1|AAH93802.1| 154|Homo sapiens FLJ12595 protein protein.
Length = 154
Score = 32.3 bits (70), Expect = 4.0
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = -3
Query: 156 SVSSMPGHTRHIQSLILDNDIELLDCPGLV 67
SV ++PG T+ +Q + LD I LLD P +V
Sbjct: 108 SVGAIPGVTKFMQEVYLDKFIRLLDAPAIV 137
>AK022657-1|BAB14161.1| 148|Homo sapiens protein ( Homo sapiens
cDNA FLJ12595 fis, clone NT2RM4001344, weakly similar to
HYPOTHETICAL GTP-BINDING PROTEIN IN POP2-HOL1 INTERGENIC
REGION. ).
Length = 148
Score = 32.3 bits (70), Expect = 4.0
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = -3
Query: 156 SVSSMPGHTRHIQSLILDNDIELLDCPGLV 67
SV ++PG T+ +Q + LD I LLD P +V
Sbjct: 102 SVGAIPGVTKFMQEVYLDKFIRLLDAPAIV 131
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,588,100
Number of Sequences: 237096
Number of extensions: 3386816
Number of successful extensions: 8087
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 7521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8084
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 18825810660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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