Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_H17
(1304 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003143-4|AAO61427.1| 247|Caenorhabditis elegans Hypothetical ... 49 6e-06
AF003143-3|AAL65781.1| 385|Caenorhabditis elegans Hypothetical ... 49 6e-06
AF003143-2|AAK68267.2| 554|Caenorhabditis elegans Hypothetical ... 49 6e-06
Z49068-9|CAA88860.1| 556|Caenorhabditis elegans Hypothetical pr... 36 0.063
U55364-2|AAN84822.2| 317|Caenorhabditis elegans Hypothetical pr... 32 1.0
Z48783-2|CAC42295.1| 805|Caenorhabditis elegans Hypothetical pr... 30 3.1
Z48783-1|CAA88701.1| 780|Caenorhabditis elegans Hypothetical pr... 30 3.1
AF233652-1|AAF63475.1| 780|Caenorhabditis elegans RFX-type tran... 30 3.1
AF226156-1|AAF61564.1| 805|Caenorhabditis elegans RFX-like tran... 30 3.1
AL110485-26|CAB60359.3| 779|Caenorhabditis elegans Hypothetical... 29 7.2
AL032630-13|CAA21568.1| 348|Caenorhabditis elegans Hypothetical... 29 7.2
Z68119-1|CAA92191.1| 523|Caenorhabditis elegans Hypothetical pr... 29 9.5
Z66564-8|CAM84731.1| 892|Caenorhabditis elegans Hypothetical pr... 29 9.5
AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical ... 29 9.5
AL032659-3|CAA21749.2| 892|Caenorhabditis elegans Hypothetical ... 29 9.5
>AF003143-4|AAO61427.1| 247|Caenorhabditis elegans Hypothetical
protein C53H9.2c protein.
Length = 247
Score = 49.2 bits (112), Expect = 6e-06
Identities = 19/37 (51%), Positives = 30/37 (81%)
Frame = -3
Query: 162 QVSVSSMPGHTRHIQSLILDNDIELLDCPGLVLPAYA 52
+VSVS+ PG TRH Q++ +D+ + L DCPGLV+P+++
Sbjct: 154 KVSVSATPGKTRHFQTIHIDSQLCLCDCPGLVMPSFS 190
>AF003143-3|AAL65781.1| 385|Caenorhabditis elegans Hypothetical
protein C53H9.2b protein.
Length = 385
Score = 49.2 bits (112), Expect = 6e-06
Identities = 19/37 (51%), Positives = 30/37 (81%)
Frame = -3
Query: 162 QVSVSSMPGHTRHIQSLILDNDIELLDCPGLVLPAYA 52
+VSVS+ PG TRH Q++ +D+ + L DCPGLV+P+++
Sbjct: 154 KVSVSATPGKTRHFQTIHIDSQLCLCDCPGLVMPSFS 190
>AF003143-2|AAK68267.2| 554|Caenorhabditis elegans Hypothetical
protein C53H9.2a protein.
Length = 554
Score = 49.2 bits (112), Expect = 6e-06
Identities = 19/37 (51%), Positives = 30/37 (81%)
Frame = -3
Query: 162 QVSVSSMPGHTRHIQSLILDNDIELLDCPGLVLPAYA 52
+VSVS+ PG TRH Q++ +D+ + L DCPGLV+P+++
Sbjct: 323 KVSVSATPGKTRHFQTIHIDSQLCLCDCPGLVMPSFS 359
>Z49068-9|CAA88860.1| 556|Caenorhabditis elegans Hypothetical
protein K01C8.9 protein.
Length = 556
Score = 35.9 bits (79), Expect = 0.063
Identities = 14/31 (45%), Positives = 23/31 (74%)
Frame = -3
Query: 156 SVSSMPGHTRHIQSLILDNDIELLDCPGLVL 64
+V ++PG T+ IQ + LD +I L+D PG++L
Sbjct: 286 NVGNLPGITKEIQEVELDKNIRLIDSPGVIL 316
>U55364-2|AAN84822.2| 317|Caenorhabditis elegans Hypothetical
protein F21C10.9 protein.
Length = 317
Score = 31.9 bits (69), Expect = 1.0
Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Frame = +2
Query: 653 LSEDTWEKFWAI------HGERLIWASWIKKYSNYINPAFLNENNDLTMDENGVPTQHSE 814
LSE WEKF R + KK I AF NE+ D+ + VPT H E
Sbjct: 162 LSETDWEKFLKYDKSVNSRDRREYLEIYYKKLDYTIGIAFFNESGDIDGVISAVPTGHQE 221
Query: 815 D 817
D
Sbjct: 222 D 222
>Z48783-2|CAC42295.1| 805|Caenorhabditis elegans Hypothetical
protein F33H1.1b protein.
Length = 805
Score = 30.3 bits (65), Expect = 3.1
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +2
Query: 596 DKLEQLDHDTEALIENENYLS-EDTWEKFWA 685
D E L + ALI+N ++ S EDTW KFW+
Sbjct: 487 DIYEILCREILALIKNIDFASVEDTWSKFWS 517
>Z48783-1|CAA88701.1| 780|Caenorhabditis elegans Hypothetical
protein F33H1.1a protein.
Length = 780
Score = 30.3 bits (65), Expect = 3.1
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +2
Query: 596 DKLEQLDHDTEALIENENYLS-EDTWEKFWA 685
D E L + ALI+N ++ S EDTW KFW+
Sbjct: 462 DIYEILCREILALIKNIDFASVEDTWSKFWS 492
>AF233652-1|AAF63475.1| 780|Caenorhabditis elegans RFX-type
transcription factor DAF-19 short variant protein.
Length = 780
Score = 30.3 bits (65), Expect = 3.1
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +2
Query: 596 DKLEQLDHDTEALIENENYLS-EDTWEKFWA 685
D E L + ALI+N ++ S EDTW KFW+
Sbjct: 462 DIYEILCREILALIKNIDFASVEDTWSKFWS 492
>AF226156-1|AAF61564.1| 805|Caenorhabditis elegans RFX-like
transcription factor DAF-19 protein.
Length = 805
Score = 30.3 bits (65), Expect = 3.1
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +2
Query: 596 DKLEQLDHDTEALIENENYLS-EDTWEKFWA 685
D E L + ALI+N ++ S EDTW KFW+
Sbjct: 487 DIYEILCREILALIKNIDFASVEDTWSKFWS 517
>AL110485-26|CAB60359.3| 779|Caenorhabditis elegans Hypothetical
protein Y46G5A.17 protein.
Length = 779
Score = 29.1 bits (62), Expect = 7.2
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -2
Query: 505 SWIM--LIS*TVVFSVRSATITAGAFVFLTLYFIRCIYREMYMGMIFSI 365
SW + ++ VFSV ++ G F F+ Y + I+ + Y+G SI
Sbjct: 59 SWTLGLVVGAVAVFSVIKHDLSFGIFPFIQNYIVHYIFGDGYLGQSISI 107
>AL032630-13|CAA21568.1| 348|Caenorhabditis elegans Hypothetical
protein Y62H9A.13 protein.
Length = 348
Score = 29.1 bits (62), Expect = 7.2
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 722 KKYSNYINPAFLNENNDLTMDENGVPTQHSEDIYKEN 832
KK + IN ++ ++NN+ DE+ V + S D+ EN
Sbjct: 74 KKTNFPINASYKHQNNESPSDEDDVDVELSNDVSNEN 110
>Z68119-1|CAA92191.1| 523|Caenorhabditis elegans Hypothetical
protein T18D3.1 protein.
Length = 523
Score = 28.7 bits (61), Expect = 9.5
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = +2
Query: 290 LDSVKTYYIEKEDASESETEILDSQDGEDHS-HVHFSVDTSYKVKCEKDEGASCYCSASH 466
L +K +EK+D + SE++ +S DG S SV +S K K +K + S +AS
Sbjct: 364 LAELKDKGLEKDDEAISESDDSESDDGSKPSTSASASVSSSSKHKKDKHDIPSTSSAAST 423
Query: 467 TENYCSTDE 493
+ + S E
Sbjct: 424 SSSSSSKHE 432
>Z66564-8|CAM84731.1| 892|Caenorhabditis elegans Hypothetical
protein Y71H9A.1 protein.
Length = 892
Score = 28.7 bits (61), Expect = 9.5
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = -3
Query: 165 FQVSVSSMPGHTRHIQSLILDNDIELLDCPGLVLPAYAV 49
F +++SS+ HT ++ LI + D+ L DC L P ++
Sbjct: 832 FCINLSSVV-HTTEVRRLIAELDVRLQDCRSLATPTNSI 869
>AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical
protein Y113G7B.12 protein.
Length = 1042
Score = 28.7 bits (61), Expect = 9.5
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = +2
Query: 317 EKEDASESETEILDSQDGEDHSHVHFSVDTSYKVKCEKDEGASCYCSASHTENY 478
E+ D E+ +S++GE+ + FSV + C+K E AS C+ H+ +Y
Sbjct: 346 EERDNGEASDNGEESENGEEIG-LKFSVLLANVRSCKKLEKASQLCAKLHSNDY 398
>AL032659-3|CAA21749.2| 892|Caenorhabditis elegans Hypothetical
protein Y71H9A.1 protein.
Length = 892
Score = 28.7 bits (61), Expect = 9.5
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = -3
Query: 165 FQVSVSSMPGHTRHIQSLILDNDIELLDCPGLVLPAYAV 49
F +++SS+ HT ++ LI + D+ L DC L P ++
Sbjct: 832 FCINLSSVV-HTTEVRRLIAELDVRLQDCRSLATPTNSI 869
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,953,868
Number of Sequences: 27780
Number of extensions: 560477
Number of successful extensions: 1712
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1712
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3642337300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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