Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_H15
         (1280 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41748-2|AAM51524.1|  639|Caenorhabditis elegans Hypothetical pr...    31   1.3  
U41748-1|AAA83335.3|  696|Caenorhabditis elegans Hypothetical pr...    31   1.3  
U32275-1|AAA75370.1|  982|Caenorhabditis elegans serine-threonin...    29   5.4  
U11280-5|AAA19437.1|  982|Caenorhabditis elegans Protein kinase ...    29   5.4  

>U41748-2|AAM51524.1|  639|Caenorhabditis elegans Hypothetical
           protein C31H2.1b protein.
          Length = 639

 Score = 31.5 bits (68), Expect = 1.3
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +1

Query: 235 NHRRQTCQWSSKYLRS*DWPVCRSCRADTWPN*C 336
           N R    +   K +R  DWPVC   RA+ W   C
Sbjct: 140 NKRLNRYEKVKKIIRRTDWPVCHEIRANLWKELC 173


>U41748-1|AAA83335.3|  696|Caenorhabditis elegans Hypothetical
           protein C31H2.1a protein.
          Length = 696

 Score = 31.5 bits (68), Expect = 1.3
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +1

Query: 235 NHRRQTCQWSSKYLRS*DWPVCRSCRADTWPN*C 336
           N R    +   K +R  DWPVC   RA+ W   C
Sbjct: 197 NKRLNRYEKVKKIIRRTDWPVCHEIRANLWKELC 230


>U32275-1|AAA75370.1|  982|Caenorhabditis elegans serine-threonine
           kinase protein.
          Length = 982

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 7/103 (6%)
 Frame = +2

Query: 230 LGIIGDKPVSGALSTLGLRTGQSADHAGLIPGLTSASGSLDNL-GLNDLSEALGLNSGIS 406
           +G  GD   S + S    R+ QS+  AGL+   T+ +G++DN+ G +         +  +
Sbjct: 354 IGRAGDSASSRSASLTSFRSMQSSGGAGLLVS-TNTTGAMDNVHGSSGYGNGSSSTTSSA 412

Query: 407 SLQDP----HLLSKPLNALGVLTSKGQKVPD--AIGLEPKPGP 517
             + P     L S   + +G + S G       AI + P P P
Sbjct: 413 RRRPPIPSQMLSSTSTSGVGTMPSHGSVGASITAIAVNPTPSP 455


>U11280-5|AAA19437.1|  982|Caenorhabditis elegans Protein kinase
           protein 18, isoforma protein.
          Length = 982

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 7/103 (6%)
 Frame = +2

Query: 230 LGIIGDKPVSGALSTLGLRTGQSADHAGLIPGLTSASGSLDNL-GLNDLSEALGLNSGIS 406
           +G  GD   S + S    R+ QS+  AGL+   T+ +G++DN+ G +         +  +
Sbjct: 354 IGRAGDSASSRSASLTSFRSMQSSGGAGLLVS-TNTTGAMDNVHGSSGYGNGSSSTTSSA 412

Query: 407 SLQDP----HLLSKPLNALGVLTSKGQKVPD--AIGLEPKPGP 517
             + P     L S   + +G + S G       AI + P P P
Sbjct: 413 RRRPPIPSQMLSSTSTSGVGTMPSHGSVGASITAIAVNPTPSP 455


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,951,304
Number of Sequences: 27780
Number of extensions: 367273
Number of successful extensions: 761
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3579019094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)