Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_H13
         (1246 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    52   1e-08
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    52   1e-08
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    24   2.4  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 52.0 bits (119), Expect = 1e-08
 Identities = 45/190 (23%), Positives = 84/190 (44%), Gaps = 12/190 (6%)
 Frame = +3

Query: 129 TSLLSYETLVHAIAGATGSVVGMTIFYPLDTLRSRIQVEDSK---KLQGSTL-ELLIKLA 296
           T  L Y     A  GA G+   +   YPLD  R+R+  +  K   + + + L   L K+ 
Sbjct: 109 TQFLRYFVGNLASGGAAGAT-SLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIF 167

Query: 297 NEEGIESLYRGLSPVLQSLSVSNFVYFYSFHALRKLSSQPTSALRDLLFGL--IAGSINV 470
             +GI  LYRG    +Q + +    YF  +   R +   P      + +G+  +  ++  
Sbjct: 168 KADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPKKTPFLISWGIAQVVTTVAG 227

Query: 471 ILTSPLWVVNTRMKLEKNNYKN--LFEGLLE----LARTEGAKGLWSGTVPSLLLVSNPA 632
           I++ P   V  RM ++    K+  L++  L     + +TEG    + G   ++L  +  A
Sbjct: 228 IVSYPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILRGTGGA 287

Query: 633 IQFMVYESLK 662
           +  ++Y+ +K
Sbjct: 288 LVLVLYDEIK 297



 Score = 35.9 bits (79), Expect = 7e-04
 Identities = 31/143 (21%), Positives = 60/143 (41%), Gaps = 17/143 (11%)
 Frame = +3

Query: 408 SQPTSALRDLLFGLIAGSINVILTSPLWVVNTRMKL--------EKNNYKNLFEGLLELA 563
           + P +  +D L G +A +I+    +P+  V   +++        E+  YK + +  + + 
Sbjct: 5   ADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIP 64

Query: 564 RTEGAKGLWSGTVPSLL-LVSNPAIQFMVYESLKRKFMSQGSFHTYTSFL--------IG 716
           + +G    W G + +++      A+ F   +  K+ F+  G     T FL         G
Sbjct: 65  KEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFL--GGVDKNTQFLRYFVGNLASG 122

Query: 717 ATAKAVATILTYPLQVIQSRLRA 785
             A A +    YPL   ++RL A
Sbjct: 123 GAAGATSLCFVYPLDFARTRLAA 145


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 52.0 bits (119), Expect = 1e-08
 Identities = 45/190 (23%), Positives = 84/190 (44%), Gaps = 12/190 (6%)
 Frame = +3

Query: 129 TSLLSYETLVHAIAGATGSVVGMTIFYPLDTLRSRIQVEDSK---KLQGSTL-ELLIKLA 296
           T  L Y     A  GA G+   +   YPLD  R+R+  +  K   + + + L   L K+ 
Sbjct: 109 TQFLRYFVGNLASGGAAGAT-SLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIF 167

Query: 297 NEEGIESLYRGLSPVLQSLSVSNFVYFYSFHALRKLSSQPTSALRDLLFGL--IAGSINV 470
             +GI  LYRG    +Q + +    YF  +   R +   P      + +G+  +  ++  
Sbjct: 168 KADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPKKTPFLISWGIAQVVTTVAG 227

Query: 471 ILTSPLWVVNTRMKLEKNNYKN--LFEGLLE----LARTEGAKGLWSGTVPSLLLVSNPA 632
           I++ P   V  RM ++    K+  L++  L     + +TEG    + G   ++L  +  A
Sbjct: 228 IVSYPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILRGTGGA 287

Query: 633 IQFMVYESLK 662
           +  ++Y+ +K
Sbjct: 288 LVLVLYDEIK 297



 Score = 35.9 bits (79), Expect = 7e-04
 Identities = 31/143 (21%), Positives = 60/143 (41%), Gaps = 17/143 (11%)
 Frame = +3

Query: 408 SQPTSALRDLLFGLIAGSINVILTSPLWVVNTRMKL--------EKNNYKNLFEGLLELA 563
           + P +  +D L G +A +I+    +P+  V   +++        E+  YK + +  + + 
Sbjct: 5   ADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIP 64

Query: 564 RTEGAKGLWSGTVPSLL-LVSNPAIQFMVYESLKRKFMSQGSFHTYTSFL--------IG 716
           + +G    W G + +++      A+ F   +  K+ F+  G     T FL         G
Sbjct: 65  KEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFL--GGVDKNTQFLRYFVGNLASG 122

Query: 717 ATAKAVATILTYPLQVIQSRLRA 785
             A A +    YPL   ++RL A
Sbjct: 123 GAAGATSLCFVYPLDFARTRLAA 145


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = +3

Query: 108 HLIVINMT-SLLSYE-TLVHAIAGATGSVVGMTIF 206
           H++   +T +LL+Y+ T +HA+     SVVG  ++
Sbjct: 131 HMLTTTITLTLLAYQATKIHAVDTYAASVVGYLLY 165


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 277,814
Number of Sequences: 438
Number of extensions: 5666
Number of successful extensions: 19
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 42502302
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)