Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_H10
         (1285 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16A10.02 |||transcription coactivator Sub1 |Schizosaccharomy...    71   3e-13
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    23   3.0  

>SPAC16A10.02 |||transcription coactivator Sub1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 136

 Score = 70.9 bits (166), Expect = 3e-13
 Identities = 33/79 (41%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
 Frame = +1

Query: 331 AEKKAKMADRTNDKEPTWVLQG--KKLLKVREFKGKVYVDIREFYEKNGELLPGKKGISL 504
           A  K    ++ +D E  W L    KK + + EF+G  YV IRE+YEK+G++LPGKKGI+L
Sbjct: 13  ASSKKPKTEKQSDHELHWALNETEKKRITLSEFRGTRYVHIREYYEKDGDMLPGKKGIAL 72

Query: 505 TPEQWRKLLSVGEEVNETV 561
              +W+KL  +  EV++++
Sbjct: 73  NINEWKKLKQLIHEVDDSL 91


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 23.4 bits (48), Expect(2) = 3.0
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -3

Query: 893 PPPPPPXP 870
           PPPPPP P
Sbjct: 761 PPPPPPPP 768



 Score = 22.6 bits (46), Expect(2) = 3.0
 Identities = 9/24 (37%), Positives = 9/24 (37%)
 Frame = -3

Query: 947 PKXXPXPXGXXDXXXXXKPPPPPP 876
           P   P P           PPPPPP
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPP 767


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,133,011
Number of Sequences: 5004
Number of extensions: 46346
Number of successful extensions: 155
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 699486656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)