Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_H10
(1285 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0205 + 20897376-20897597,20898623-20898774,20899874-209000... 59 9e-09
01_06_0427 - 29273872-29273966,29275507-29275609,29275702-29276058 50 4e-06
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 29 0.28
04_04_0057 + 22410167-22411330 27 0.40
04_04_0137 - 23053148-23053798,23053911-23054146,23054268-230544... 27 0.82
10_06_0008 - 9533424-9533475,9533526-9535344,9535599-9536364,955... 25 1.8
04_01_0197 + 2323790-2324098,2324145-2324774 25 1.9
01_05_0490 + 22672241-22674679 24 2.8
12_02_1174 - 26696869-26698191 25 5.3
04_03_0660 + 18463011-18463322,18463424-18463516,18464500-184646... 25 6.9
07_03_1090 + 23891294-23892222,23892317-23892516,23895241-238954... 24 8.6
>02_04_0205 +
20897376-20897597,20898623-20898774,20899874-20900084,
20900734-20900872,20901310-20901341,20901471-20901557,
20901720-20901932,20903687-20903869,20903979-20904084,
20905042-20905064,20905511-20905570
Length = 475
Score = 58.8 bits (136), Expect = 9e-09
Identities = 26/50 (52%), Positives = 36/50 (72%)
Frame = +1
Query: 412 VREFKGKVYVDIREFYEKNGELLPGKKGISLTPEQWRKLLSVGEEVNETV 561
VR + GKV VDIREFYEK+G+ LPG+KGI L +QW+ L + ++E +
Sbjct: 422 VRTWNGKVVVDIREFYEKDGKTLPGRKGIQLPMDQWKILRDNIKAIDEAI 471
>01_06_0427 - 29273872-29273966,29275507-29275609,29275702-29276058
Length = 184
Score = 50.0 bits (114), Expect = 4e-06
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Frame = +1
Query: 313 EDRNPPAEKKAKMADRTNDKEPTWVL---QGKKLLKVREFKGKVYVDIREFYEKNGELLP 483
E+ E++ R D E +L ++ + ++EFKGK + IRE+Y K+G+ LP
Sbjct: 92 EEEEEEEEERGGGTKREYDDEGDLILCRLSARRRVTLQEFKGKTLLSIREYYFKDGKELP 151
Query: 484 GKKGISLTPEQW 519
KGISLT EQW
Sbjct: 152 A-KGISLTVEQW 162
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 28.7 bits (61), Expect(2) = 0.28
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = -3
Query: 947 PKXXPXPXGXXDXXXXXKPPPPPPXP 870
P P P G PPPPPP P
Sbjct: 548 PPPPPPPSGNKPAFSPPPPPPPPPPP 573
Score = 23.8 bits (49), Expect(2) = 0.28
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -3
Query: 893 PPPPPPXPXTXXXS 852
PPPPPP P + S
Sbjct: 569 PPPPPPLPQSNYAS 582
>04_04_0057 + 22410167-22411330
Length = 387
Score = 26.6 bits (56), Expect(2) = 0.40
Identities = 11/32 (34%), Positives = 11/32 (34%)
Frame = -3
Query: 893 PPPPPPXPXTXXXSXXXXXXXXCXXXXXPXKP 798
PPPPPP P S C P P
Sbjct: 182 PPPPPPPPAAAAASPSPERSPRCQPSPPPPPP 213
Score = 25.4 bits (53), Expect(2) = 0.40
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -3
Query: 896 KPPPPPPXP 870
KPPPPPP P
Sbjct: 180 KPPPPPPPP 188
>04_04_0137 -
23053148-23053798,23053911-23054146,23054268-23054458,
23054587-23056010
Length = 833
Score = 26.6 bits (56), Expect(2) = 0.82
Identities = 12/38 (31%), Positives = 13/38 (34%)
Frame = -3
Query: 893 PPPPPPXPXTXXXSXXXXXXXXCXXXXXPXKP*XPXFP 780
PPPPPP P + C P P P P
Sbjct: 368 PPPPPPPPPPPAVTQQQDVKTSCGPAVPPPPPPTPPPP 405
Score = 24.2 bits (50), Expect(2) = 0.82
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = -3
Query: 896 KPPPPPPXP 870
+PPPPPP P
Sbjct: 364 RPPPPPPPP 372
>10_06_0008 -
9533424-9533475,9533526-9535344,9535599-9536364,
9551969-9552097
Length = 921
Score = 25.0 bits (52), Expect(2) = 1.8
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -3
Query: 893 PPPPPPXPXT 864
PPPPPP P T
Sbjct: 343 PPPPPPPPDT 352
Score = 24.6 bits (51), Expect(2) = 1.8
Identities = 9/20 (45%), Positives = 9/20 (45%)
Frame = -3
Query: 929 PXGXXDXXXXXKPPPPPPXP 870
P G PPPPPP P
Sbjct: 327 PEGSNHNHQGNPPPPPPPPP 346
>04_01_0197 + 2323790-2324098,2324145-2324774
Length = 312
Score = 25.0 bits (52), Expect(2) = 1.9
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -3
Query: 893 PPPPPPXPXT 864
PPPPPP P T
Sbjct: 34 PPPPPPPPDT 43
Score = 24.6 bits (51), Expect(2) = 1.9
Identities = 9/20 (45%), Positives = 9/20 (45%)
Frame = -3
Query: 929 PXGXXDXXXXXKPPPPPPXP 870
P G PPPPPP P
Sbjct: 16 PEGSNHNHQGNPPPPPPPPP 35
>01_05_0490 + 22672241-22674679
Length = 812
Score = 24.2 bits (50), Expect(3) = 2.8
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = -3
Query: 896 KPPPPPPXP 870
+PPPPPP P
Sbjct: 606 RPPPPPPPP 614
Score = 22.2 bits (45), Expect(3) = 2.8
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = -3
Query: 893 PPPPPPXPXTXXXS 852
P PPPP P T S
Sbjct: 639 PQPPPPPPPTTRRS 652
Score = 20.6 bits (41), Expect(3) = 2.8
Identities = 9/23 (39%), Positives = 9/23 (39%)
Frame = -3
Query: 737 PTXPXXLSSLXPXNPPXRGXPGP 669
P P S P PP R P P
Sbjct: 644 PPPPTTRRSRKPPQPPSRPAPPP 666
>12_02_1174 - 26696869-26698191
Length = 440
Score = 25.4 bits (53), Expect(2) = 5.3
Identities = 10/26 (38%), Positives = 10/26 (38%)
Frame = -3
Query: 947 PKXXPXPXGXXDXXXXXKPPPPPPXP 870
P P P PPPPPP P
Sbjct: 137 PPHRPPPVKPQPPPSLPPPPPPPPPP 162
Score = 22.6 bits (46), Expect(2) = 5.3
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = -3
Query: 896 KPPPPPPXPXTXXXS 852
+PP PPP P T S
Sbjct: 186 QPPSPPPPPPTRPPS 200
>04_03_0660 +
18463011-18463322,18463424-18463516,18464500-18464607,
18464892-18465044,18465256-18465354,18465443-18465571,
18465987-18466166,18466208-18466246,18466247-18466363,
18466445-18466609
Length = 464
Score = 25.4 bits (53), Expect(2) = 6.9
Identities = 9/22 (40%), Positives = 10/22 (45%)
Frame = -3
Query: 935 PXPXGXXDXXXXXKPPPPPPXP 870
P P +PPPPPP P
Sbjct: 38 PPPPARHRAPSPPRPPPPPPPP 59
Score = 22.2 bits (45), Expect(2) = 6.9
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = -3
Query: 890 PPPPPXPXT 864
PPPPP P T
Sbjct: 52 PPPPPPPPT 60
>07_03_1090 +
23891294-23892222,23892317-23892516,23895241-23895482,
23895771-23896461,23896486-23896562
Length = 712
Score = 24.2 bits (50), Expect(2) = 8.6
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = -3
Query: 896 KPPPPPPXP 870
+PPPPPP P
Sbjct: 223 RPPPPPPPP 231
Score = 23.0 bits (47), Expect(2) = 8.6
Identities = 9/24 (37%), Positives = 9/24 (37%)
Frame = -3
Query: 947 PKXXPXPXGXXDXXXXXKPPPPPP 876
P P P PPPPPP
Sbjct: 207 PMAAPAPPQTNPPRPVRPPPPPPP 230
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,669,452
Number of Sequences: 37544
Number of extensions: 393941
Number of successful extensions: 6836
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5595
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3992400636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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