Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_H10
         (1285 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    25   1.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   3.3  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   7.6  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +1

Query: 445 IREFYEKNGELLPGKKGISLTPEQWRKLLSV-GEEVNE 555
           I+ F  KN +    ++GI + PE+W+K++   G+ + E
Sbjct: 307 IQFFANKNQKFY--ERGIMMLPERWQKVIDQNGQHITE 342


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 3.3
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -3

Query: 896  KPPPPPPXP 870
            +PPPPPP P
Sbjct: 1354 QPPPPPPPP 1362


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 7.6
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = -3

Query: 923 GXXDXXXXXKPPPPPP 876
           G  D      PPPPPP
Sbjct: 333 GDSDTPPKPAPPPPPP 348



 Score = 22.6 bits (46), Expect = 7.6
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = -3

Query: 914 DXXXXXKPPPPPPXP 870
           D     KP PPPP P
Sbjct: 334 DSDTPPKPAPPPPPP 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 245,157
Number of Sequences: 438
Number of extensions: 5043
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 44063121
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)