Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_H09
         (1304 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        24   2.2  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    24   2.9  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   6.6  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   6.6  

>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 24.2 bits (50), Expect = 2.2
 Identities = 14/53 (26%), Positives = 22/53 (41%)
 Frame = -2

Query: 727 TDDIFGIELLPSFNDIGLWMRKRSKNSKPRSASEILQAVSTRSVRWNVLHNLP 569
           T +    ELLP  ++ G+  RKR K   P      ++    +      L N+P
Sbjct: 333 TSEALPFELLPLDSEPGMLKRKRQKYHDPSQLLRHVEESDKQRTHQPFLLNIP 385


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 23.8 bits (49), Expect = 2.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 572 THNEKLVSPHGAVVNLVLDRFSY 504
           T+N  LV+P+G  V  ++D  SY
Sbjct: 511 TYNRHLVAPNGDHVISLIDEISY 533


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 6.6
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -1

Query: 788  RYEVFHAEPGVH 753
            +YEVF+  PG+H
Sbjct: 1301 KYEVFNCAPGLH 1312


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.6 bits (46), Expect = 6.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 657 RKTPSPGLPVKSCRPSPPDR 598
           RK   PG+P+ S   S PD+
Sbjct: 828 RKMEPPGVPLNSTPRSTPDK 847



 Score = 22.2 bits (45), Expect = 8.8
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -3

Query: 663  RGRKTPSPGLPVKSCRPSPPDRCDGMYST 577
            +G  + S G+P+K     PP    G  ST
Sbjct: 1095 QGSSSSSEGVPLKGTAVPPPSGSSGPGST 1123


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,496
Number of Sequences: 336
Number of extensions: 4291
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 59
effective length of database: 102,761
effective search space used: 38535375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)