Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_H08
(1279 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23H4.07c |srp102||signal recognition particle receptor beta ... 71 3e-13
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 62 2e-10
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 58 2e-09
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 47 5e-06
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo... 44 6e-05
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 1.4
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 29 1.4
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ... 29 1.8
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|... 28 2.4
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 28 3.2
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 28 3.2
SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma... 27 5.6
SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom... 27 5.6
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 27 7.3
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 26 9.7
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 26 9.7
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 26 9.7
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 26 9.7
>SPAC23H4.07c |srp102||signal recognition particle receptor beta
subunit Srp102 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 71.3 bits (167), Expect = 3e-13
Identities = 55/178 (30%), Positives = 95/178 (53%), Gaps = 6/178 (3%)
Frame = +3
Query: 216 LLSLIVLAVTLIFWWIFSRRYTLRN---SVLLMGLSDSGKTLLFVRLAYSQYRQTFTSMK 386
+++ I++ + IF R T++ +V L+G SDSGKT LF L Y + + T S++
Sbjct: 11 IVATIIIGAIISTLGIFFTRKTIQKKLPAVFLIGPSDSGKTSLFCELIYKEKKTTVPSIE 70
Query: 387 ENIEEYITSNKTLKVVDLPGQERLRNKFFEQHKS--SAKGIVFVIDSINIQKEIRDVAEY 560
N E + +VDLPG R + + + K +VFV++S I +++ +V
Sbjct: 71 PN--EAVWKYGAW-LVDLPGHPRAKRWITTKFSGNYNVKAVVFVLNSATIDRDVHEVGLM 127
Query: 561 LY-TILCDPIIQGNTTPLLILCNKQDQPLAKGSQVIKGLLEKEINLVRVTKSNQLQSV 731
L+ TIL + + LLI CNK D A+ ++ I+ LL+ E++ + K+ QL+S+
Sbjct: 128 LFDTIL--KCRKHHVPHLLIACNKFDLFTAQPAEKIQQLLKAELHNILEEKNLQLESI 183
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 62.1 bits (144), Expect = 2e-10
Identities = 41/140 (29%), Positives = 73/140 (52%), Gaps = 1/140 (0%)
Frame = +3
Query: 264 FSRRYTLRNS-VLLMGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKVVDL 440
FSR ++ + +L++GL +GKT + +L +Q T ++ N+E N V D+
Sbjct: 13 FSRLFSNKEMRILMLGLDAAGKTTILYKLKLNQSVVTIPTVGFNVETVTYKNIKFNVWDV 72
Query: 441 PGQERLRNKFFEQHKSSAKGIVFVIDSINIQKEIRDVAEYLYTILCDPIIQGNTTPLLIL 620
GQ+++R + + + KG++FV+DS + I + + L+ I+ D + LL+L
Sbjct: 73 GGQDKIR-PLWRHYFTGTKGLIFVVDSAD-SNRISEARQELHRIISDR--EMRDCLLLVL 128
Query: 621 CNKQDQPLAKGSQVIKGLLE 680
NKQD P A I +L+
Sbjct: 129 ANKQDLPGALSPAQITDVLQ 148
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 58.4 bits (135), Expect = 2e-09
Identities = 40/144 (27%), Positives = 76/144 (52%)
Frame = +3
Query: 234 LAVTLIFWWIFSRRYTLRNSVLLMGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITS 413
L+++ +F +F +R +L++GL +GKT + +L + T ++ N+E
Sbjct: 3 LSISKLFQSLFGKR---EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYR 59
Query: 414 NKTLKVVDLPGQERLRNKFFEQHKSSAKGIVFVIDSINIQKEIRDVAEYLYTILCDPIIQ 593
N + V D+ GQ+++R + + + +GI+FV+DS N ++ I + E L +L + ++
Sbjct: 60 NISFTVWDVGGQDKIR-PLWRHYFQNTQGIIFVVDS-NDRERISEAHEELQRMLNEDELR 117
Query: 594 GNTTPLLILCNKQDQPLAKGSQVI 665
LL+ NKQD P A + I
Sbjct: 118 --DALLLVFANKQDLPNAMNAAEI 139
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 47.2 bits (107), Expect = 5e-06
Identities = 34/128 (26%), Positives = 61/128 (47%)
Frame = +3
Query: 294 VLLMGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKVVDLPGQERLRNKFF 473
VLL+GL ++GKT + L + + I + D+ GQ+ LRN F+
Sbjct: 19 VLLLGLDNAGKTTILKCLLNEDVNEVSPTFGFQIRTLEVEGLRFTIWDIGGQKTLRN-FW 77
Query: 474 EQHKSSAKGIVFVIDSINIQKEIRDVAEYLYTILCDPIIQGNTTPLLILCNKQDQPLAKG 653
+ + S + I++V+DS++ + + L +L + + T +L+L NK D A
Sbjct: 78 KNYFESTEAIIWVVDSLD-DLRLEECRNTLQELLVEEKLL--FTSILVLANKSDVSGALS 134
Query: 654 SQVIKGLL 677
S+ I +L
Sbjct: 135 SEEISKIL 142
>SPBC31F10.06c |sar1||ADP-ribosylation factor
Sar1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 190
Score = 43.6 bits (98), Expect = 6e-05
Identities = 32/128 (25%), Positives = 55/128 (42%)
Frame = +3
Query: 294 VLLMGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKVVDLPGQERLRNKFF 473
+L +GL ++GKT L L + ++ EE N DL G ++ R + +
Sbjct: 23 MLFLGLDNAGKTTLLHMLKNDRLAVMQPTLHPTSEELAIGNVRFTTFDLGGHQQAR-RLW 81
Query: 474 EQHKSSAKGIVFVIDSINIQKEIRDVAEYLYTILCDPIIQGNTTPLLILCNKQDQPLAKG 653
+ GIV+++D + ++ AE + + + + P LIL NK D P A
Sbjct: 82 RDYFPEVNGIVYLVDCCDFERLSESKAELDALLAMEELAR---VPFLILGNKIDAPGAIS 138
Query: 654 SQVIKGLL 677
+K L
Sbjct: 139 EDELKAAL 146
>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 689
Score = 29.1 bits (62), Expect = 1.4
Identities = 23/100 (23%), Positives = 48/100 (48%)
Frame = +3
Query: 111 SDLVCVKRKNSTMESEVVKEKIHTEPILNDPRYITLLSLIVLAVTLIFWWIFSRRYTLRN 290
S+ C +R +ST + + + T P+++ + L S++V A+ I+W+ R
Sbjct: 52 SNNCCNRRFHSTWQKKKHDDLTATVPVIDFRKNQKLTSIVVNAIQAIYWY-------ARR 104
Query: 291 SVLLMGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYIT 410
S L G++++ ++ L F S++ I +Y+T
Sbjct: 105 SNCLTGINEA--EYIWKSLIPESIFYHFVSLQSFIRKYLT 142
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 29.1 bits (62), Expect = 1.4
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = -1
Query: 616 IRRGVVFP*MIG-SHKIVYRYSATSLISFCILIESITNTIPLALL 485
I+ + F + G SH ++ + T+L SFC + ++N PL+LL
Sbjct: 601 IQENIYFGIVAGLSHGPLHGFPLTNLQSFCTISSFLSNDFPLSLL 645
>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 28.7 bits (61), Expect = 1.8
Identities = 16/59 (27%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Frame = +3
Query: 564 YTILCDPIIQGNTTPLLILCNKQDQPLAKGSQVIKGL-LEKEIN-LVRVTKSNQLQSVD 734
Y +C I++ N+T L + ++ + G+Q +K L + +E++ L+R + +N L+ V+
Sbjct: 410 YKSICQAILRMNSTKALACLDYLNENIFTGNQTMKCLEIHQELSELIRNSSTNYLEPVE 468
>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 759
Score = 28.3 bits (60), Expect = 2.4
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -1
Query: 502 IPLALLLCCSKNLFLSLSCPGRSTTFNVLLEVIYSSIFSFI 380
+P+A +L C + P RST +N L EV S I SF+
Sbjct: 463 LPIAFILGCLVGILQHYIAP-RSTMYNSLFEVTGSIITSFL 502
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 27.9 bits (59), Expect = 3.2
Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 12/124 (9%)
Frame = +3
Query: 276 YTLRN-SVLLMGLSDSGKTLLFVRLAYSQYRQTFTS---MKENIEEYITSNKT--LKVVD 437
++LR ++ +G GKT L R Y Q+ T+ + + + ++T L++ D
Sbjct: 7 FSLRKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 66
Query: 438 LPGQERLRNKFFEQ-HKSSAKGIVFVIDS----INIQKEIRDV-AEYLYTILCDPIIQGN 599
GQER R+ SS IV+ I + +N +K I DV AE ++ ++ GN
Sbjct: 67 TAGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIEDVRAERGDDVII--VLVGN 124
Query: 600 TTPL 611
T L
Sbjct: 125 KTDL 128
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 27.9 bits (59), Expect = 3.2
Identities = 9/22 (40%), Positives = 18/22 (81%)
Frame = +3
Query: 204 RYITLLSLIVLAVTLIFWWIFS 269
+YI ++S+IVL +T + W++F+
Sbjct: 1440 QYINIISIIVLVLTSLAWFLFN 1461
>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 535
Score = 27.1 bits (57), Expect = 5.6
Identities = 18/50 (36%), Positives = 29/50 (58%)
Frame = +3
Query: 462 NKFFEQHKSSAKGIVFVIDSINIQKEIRDVAEYLYTILCDPIIQGNTTPL 611
N F +H S KGIVFV D+ ++Q ++D ++L L ++G +PL
Sbjct: 363 NVFAARHLSEVKGIVFV-DAGSVQ-TLKDSGQFLSRFLL--FVRGWLSPL 408
>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 601
Score = 27.1 bits (57), Expect = 5.6
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Frame = +3
Query: 678 EKEINLVRVTK--SNQLQSVDPSEGNTGSFLGKDGKDFEFSHIRNKVEFAECSANTNDDE 851
E+ + + R TK SN L S +E + S G +FS I+ K + S+ ++
Sbjct: 218 EENVTITRKTKLSSNILYSDSDTERQSDS--GSKNVARQFSRIKRKRKVLSSSSEDDESS 275
Query: 852 NPTD-IKPL 875
+P D +KP+
Sbjct: 276 SPEDLLKPI 284
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 26.6 bits (56), Expect = 7.3
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +3
Query: 291 SVLLMGLSDSGKTLLFVRLAYSQYRQTFTSMKENIEEYITSNKTLKVVDLP 443
S L G S +GKTLL LA + ++ ++ EY+ + +++ P
Sbjct: 616 SFLFCGPSGTGKTLLTKALASFMFDDENAMIRIDMSEYMEKHSVSRLIGAP 666
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 26.2 bits (55), Expect = 9.7
Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +3
Query: 438 LPGQERLRNKFFEQHKSSAKGIVFVIDSI-NIQKEIRDVAEYLYT 569
L + L N FFE+ K+ + ++++DS+ ++ EIR + + T
Sbjct: 440 LAEDQLLLNNFFEELKNKLESDLYLLDSVFDLVPEIRSLLQQFST 484
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 26.2 bits (55), Expect = 9.7
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -1
Query: 889 EIQS-CRGLMSVGFSSSFVLAEHSANSTLFLM*ENSKSLPSLP 764
EI+S CR LM+VG + H+A L E +P+LP
Sbjct: 1186 EIESLCRLLMTVGVNIDATEKGHAAMDVYVLRMETITKIPNLP 1228
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 26.2 bits (55), Expect = 9.7
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = +3
Query: 603 TPLLILCNKQDQPLAKGSQVIKGLLEKEINLVRVTKSNQLQSVDPSEGNTGSFL 764
TP+ + ++ +P G +K LLEK ++ + +N S PS+G GSF+
Sbjct: 105 TPIPVSASRHHKPHHSG---LKNLLEKAMHPGHKSNANSPTSESPSKG-FGSFI 154
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 26.2 bits (55), Expect = 9.7
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = +3
Query: 234 LAVTLIFWWIFSRRYTLRNSVLLMGLSDSGKTLLFVRLAYSQYRQTFTSMK 386
L + L F +FS+ R+ VLL G +GKTLL +A ++ F S+K
Sbjct: 671 LQLPLQFPELFSQGLKPRSGVLLYGPPGTGKTLLAKAVA-TELSLEFVSIK 720
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,429,221
Number of Sequences: 5004
Number of extensions: 93335
Number of successful extensions: 290
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 288
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 695512300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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