Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_H08
         (1279 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   5.7  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   5.7  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   5.7  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   7.5  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   10.0 

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 5.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 290 VAKSIPSRENPPKYEGYC 237
           V  +IP+ ENP  Y  +C
Sbjct: 269 VTAAIPTSENPADYRYFC 286


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 5.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 290 VAKSIPSRENPPKYEGYC 237
           V  +IP+ ENP  Y  +C
Sbjct: 269 VTAAIPTSENPADYRYFC 286


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 5.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 290 VAKSIPSRENPPKYEGYC 237
           V  +IP+ ENP  Y  +C
Sbjct: 269 VTAAIPTSENPADYRYFC 286


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 8/20 (40%), Positives = 14/20 (70%), Gaps = 2/20 (10%)
 Frame = -3

Query: 821 CEFDFISNVREFKIF--TVF 768
           C FD++++  E +IF  T+F
Sbjct: 197 CSFDYLTDTNEIRIFVATIF 216


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 10.0
 Identities = 9/23 (39%), Positives = 10/23 (43%)
 Frame = +2

Query: 497 GNCVCD*FYQYTERNQRCSRIPI 565
           G C C   YQ     Q C+  PI
Sbjct: 245 GGCHCKPGYQADVEKQECTECPI 267


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 300,254
Number of Sequences: 438
Number of extensions: 6562
Number of successful extensions: 39
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 43822995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)