Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_H07
(1333 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0686 - 30900748-30902167,30903442-30904742 33 0.51
07_03_1136 + 24218601-24218734,24218769-24219906 33 0.67
01_03_0005 + 11568545-11569119,11569179-11569191 32 0.89
09_02_0603 - 11150739-11150746,11150791-11151340 32 1.2
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 31 2.1
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 31 2.7
05_07_0350 - 29457444-29457871,29458786-29461456 30 4.7
01_01_0446 + 3321832-3322232,3322398-3322455,3322810-3323748,332... 30 4.7
12_01_0033 - 272848-272943,274026-274169,274264-274375,274521-27... 29 8.3
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25... 29 8.3
07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,504... 29 8.3
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 33.1 bits (72), Expect = 0.51
Identities = 23/79 (29%), Positives = 23/79 (29%)
Frame = -2
Query: 1053 PPXXXXGGFXXPPPLGGXPPPXXEXXPGGFXKXPPXPXGKXXXXFPLXXXXXTXGPXGGF 874
PP G PPP G PPP P PP P GK P P
Sbjct: 336 PPPPPPKGPPPPPPAKGPPPPPPPKGPS--PPPPPPPGGKKGGPPPPPPKGGASRPPAA- 392
Query: 873 PGXTXGXFXXPRGXPPXXW 817
PG G P W
Sbjct: 393 PGVPTGSADQQAKLKPLHW 411
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 32.7 bits (71), Expect = 0.67
Identities = 15/37 (40%), Positives = 15/37 (40%)
Frame = +2
Query: 944 GXGGXFXXPPGXXSXXGGGXPPXGGGXKNPPXXXXGG 1054
G GG PPG G PP GGG P GG
Sbjct: 152 GGGGALARPPGGGRGGALGRPPGGGGGGGGPGRAPGG 188
Score = 31.9 bits (69), Expect = 1.2
Identities = 16/38 (42%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Frame = +2
Query: 944 GXGGXFXXPPGXXSXXGG-GXPPXGGGXKNPPXXXXGG 1054
G GG PPG GG G P GGG P GG
Sbjct: 164 GRGGALGRPPGGGGGGGGPGRAPGGGGGGGGPGRAPGG 201
Score = 30.7 bits (66), Expect = 2.7
Identities = 22/73 (30%), Positives = 22/73 (30%), Gaps = 1/73 (1%)
Frame = +2
Query: 872 GXPPXGPXVXXXXXKGKXXXFFPWGXGGXFXXPPGXXSXXGGGXP-PXGGGXKNPPXXXX 1048
G PP G G G GG PPG G P P GGG P
Sbjct: 89 GLPPGGGGAPGPLGGGGARPPGGGGGGGPPSLPPGAGGGGGARPPAPGGGGGGGAPRRVL 148
Query: 1049 GGLXXXXXXXXPP 1087
GG PP
Sbjct: 149 GGGGGGGALARPP 161
>01_03_0005 + 11568545-11569119,11569179-11569191
Length = 195
Score = 32.3 bits (70), Expect = 0.89
Identities = 21/66 (31%), Positives = 24/66 (36%), Gaps = 7/66 (10%)
Frame = +2
Query: 878 PPXGPXVXXXXXKGKXXXFFPWGXGGX-------FXXPPGXXSXXGGGXPPXGGGXKNPP 1036
PP P V + +P G GG + PP S GGG GGG PP
Sbjct: 56 PPPPPPVVTPTPQCPPPPSYPSGGGGGGGGGTVMYTSPPPPYSGGGGGSSTGGGGIYYPP 115
Query: 1037 XXXXGG 1054
GG
Sbjct: 116 PTGGGG 121
Score = 29.5 bits (63), Expect = 6.3
Identities = 18/47 (38%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
Frame = -2
Query: 639 PPPXXXGPGXFXG---GXGXGXXXPTPXXPGXG-GFFXXEKXXPPPP 511
PPP G G G G G G PTP P +F PPPP
Sbjct: 114 PPPTGGGGGGGGGWQQGGGGGGAYPTPPPPNPFLPYFPFYYYSPPPP 160
>09_02_0603 - 11150739-11150746,11150791-11151340
Length = 185
Score = 31.9 bits (69), Expect = 1.2
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = -2
Query: 1056 RPPXXXXGGFXXPPPLGGXPPP 991
RPP G F PPP G PPP
Sbjct: 26 RPPRLEKGNFALPPPFGFPPPP 47
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 31.1 bits (67), Expect = 2.1
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = -2
Query: 1035 GGFXXPPPLGGXPPPXXEXXPGGFXKXPPXP 943
GG PPP+GG P P GF P P
Sbjct: 1146 GGVPPPPPVGGLGGPPAPPPPAGFRGGTPPP 1176
Score = 31.1 bits (67), Expect = 2.1
Identities = 17/41 (41%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Frame = -2
Query: 1053 PPXXXXGGFXXPPPLGGXP-PPXXEXXPGGFXKXPPXPXGK 934
PP GG PP G P PP PGG PP P G+
Sbjct: 1187 PPPRGHGGVGGPPTPPGAPAPPMPPGVPGG---PPPPPGGR 1224
Score = 30.7 bits (66), Expect = 2.7
Identities = 18/59 (30%), Positives = 18/59 (30%)
Frame = -2
Query: 1053 PPXXXXGGFXXPPPLGGXPPPXXEXXPGGFXKXPPXPXGKXXXXFPLXXXXXTXGPXGG 877
PP GG P GG PP G PP P G P P GG
Sbjct: 1165 PPAGFRGGTPPPNAHGGVAPPPPPPRGHGGVGGPPTPPGAPAPPMPPGVPGGPPPPPGG 1223
Score = 29.9 bits (64), Expect = 4.7
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = -2
Query: 1053 PPXXXXGGFXXPPPLGGXPPPXXEXXPGGFXKXPPXP 943
PP G PPP G P PGG PP P
Sbjct: 1089 PPTLGDYGVAPPPPSIGAGAPPPPPPPGGITGVPPPP 1125
Score = 29.5 bits (63), Expect = 6.3
Identities = 17/47 (36%), Positives = 19/47 (40%), Gaps = 6/47 (12%)
Frame = +2
Query: 548 PPXPGXXGVGX------WXPXPFPPXKXPGPXXXGGGKGXXXPXGGK 670
PP G GVG P PP GP GG+G P GG+
Sbjct: 1187 PPPRGHGGVGGPPTPPGAPAPPMPPGVPGGPPPPPGGRGLPAPPGGR 1233
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 30.7 bits (66), Expect = 2.7
Identities = 14/38 (36%), Positives = 14/38 (36%)
Frame = +2
Query: 551 PXPGXXGVGXWXPXPFPPXKXPGPXXXGGGKGXXXPXG 664
P P G G P P PP P G G G P G
Sbjct: 338 PSPSAAGAGSGPPPPPPPAAPAAPRPPGPGPGPPPPPG 375
>05_07_0350 - 29457444-29457871,29458786-29461456
Length = 1032
Score = 29.9 bits (64), Expect = 4.7
Identities = 17/48 (35%), Positives = 18/48 (37%)
Frame = -3
Query: 725 PFXXKFFXXXXPXFXGNPXSPLXGXXXPXPPPKXXXPGFXXGGXGXGP 582
P +F F GNP L G P P P PG GG G P
Sbjct: 609 PHNGQFAYFNASSFAGNPRLVLCGTPAPGPAPGTTTPG--SGGDGRAP 654
>01_01_0446 + 3321832-3322232,3322398-3322455,3322810-3323748,
3324504-3324654,3324740-3324818,3325826-3325934
Length = 578
Score = 29.9 bits (64), Expect = 4.7
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = +2
Query: 950 GGXFXXPPGXXSXXGGGXPPXGGGXKNPPXXXXGG 1054
GG PP GG P GGG PP GG
Sbjct: 369 GGQGSLPPSYDGGYGGRPMPGGGGPGAPPPYHGGG 403
>12_01_0033 - 272848-272943,274026-274169,274264-274375,274521-274702,
274781-274912,275038-276330,279841-280545,280649-280695,
280787-280865
Length = 929
Score = 29.1 bits (62), Expect = 8.3
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -2
Query: 1020 PPPLGGXPPPXXEXXPGGFXKXPPXP 943
P P G PPP PGG PP P
Sbjct: 618 PRPPGAPPPPPPPGKPGGPPPPPPRP 643
>11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-256958,
257038-257169,257297-258589,259133-259837,260465-260549,
260604-260650,260810-260900,261838-262101,262195-262309,
262455-262570,262713-262847,262969-263036,263292-263411
Length = 1235
Score = 29.1 bits (62), Expect = 8.3
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -2
Query: 1020 PPPLGGXPPPXXEXXPGGFXKXPPXP 943
P P G PPP PGG PP P
Sbjct: 923 PRPPGAPPPPPPPGKPGGPPPPPPPP 948
>07_01_0674 +
5047503-5047646,5047808-5047901,5048743-5048828,
5049380-5049429,5049517-5049586,5049668-5049749,
5049867-5050267,5050414-5050941,5051823-5052044
Length = 558
Score = 29.1 bits (62), Expect = 8.3
Identities = 15/47 (31%), Positives = 16/47 (34%), Gaps = 2/47 (4%)
Frame = -2
Query: 645 PXPPPXXXGPGXFXGGXGXGXXXPTPXXPG--XGGFFXXEKXXPPPP 511
P PPP P G G P P PG + PPPP
Sbjct: 230 PPPPPPPPKPANIAGAPGLPLPPPPPPPPGPPPREIVPGQTLLPPPP 276
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.152 0.519
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,927,336
Number of Sequences: 37544
Number of extensions: 525433
Number of successful extensions: 1188
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1047
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4178635068
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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