Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_H06
         (1293 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55854-7|AAK68158.1|  166|Caenorhabditis elegans Hypothetical pr...    30   4.1  
AF016679-3|AAB66160.1|  578|Caenorhabditis elegans Hypothetical ...    29   5.4  
AF016679-2|AAB66159.1|  658|Caenorhabditis elegans Hypothetical ...    29   5.4  
AF016679-1|AAB66162.1|  539|Caenorhabditis elegans Hypothetical ...    29   5.4  
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ...    29   5.4  
U00043-6|AAC77507.1|  487|Caenorhabditis elegans Hypothetical pr...    29   7.2  
AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric c...    29   7.2  
Z74472-4|CAA98942.1|  301|Caenorhabditis elegans Hypothetical pr...    29   9.5  
V00147-1|CAA23463.1|  296|Caenorhabditis elegans protein ( Caeno...    29   9.5  
J01047-1|AAA27988.1|  296|Caenorhabditis elegans protein ( C.ele...    29   9.5  
AC006615-1|AAK68230.1|  149|Caenorhabditis elegans Hypothetical ...    29   9.5  

>U55854-7|AAK68158.1|  166|Caenorhabditis elegans Hypothetical
           protein C04G6.10 protein.
          Length = 166

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = +2

Query: 608 FYPLLLIMSPGSALVPGAILKIISRDLFEFGMEHTRFSPSTTSSFEQGLKTIPSSR--QQ 781
           F  L+L +      V  A+L + S ++        R S STTSS E  + T+ SSR  +Q
Sbjct: 7   FSTLILALGAYYGQVQAAVLPVSSTEV-----ALVRSSASTTSSSETSIDTLGSSRVKRQ 61

Query: 782 RGCG 793
            GCG
Sbjct: 62  GGCG 65


>AF016679-3|AAB66160.1|  578|Caenorhabditis elegans Hypothetical
           protein T28C12.4b protein.
          Length = 578

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = +2

Query: 422 VCKLLVQREVWLPFLHWDF*GLLYFFFT---FIQKMFWIVDSHLLEPMGLWTHRNITFFN 592
           +CKLLV RE+ +   H+   G L F  T        + + D  +LE M  W H NI+ F 
Sbjct: 138 ICKLLVSREIIVVTFHYRL-GFLGFLSTGDDVCPGNYGLFD--MLEAM-RWVHANISSFG 193

Query: 593 G 595
           G
Sbjct: 194 G 194


>AF016679-2|AAB66159.1|  658|Caenorhabditis elegans Hypothetical
           protein T28C12.4a protein.
          Length = 658

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = +2

Query: 422 VCKLLVQREVWLPFLHWDF*GLLYFFFT---FIQKMFWIVDSHLLEPMGLWTHRNITFFN 592
           +CKLLV RE+ +   H+   G L F  T        + + D  +LE M  W H NI+ F 
Sbjct: 218 ICKLLVSREIIVVTFHYRL-GFLGFLSTGDDVCPGNYGLFD--MLEAM-RWVHANISSFG 273

Query: 593 G 595
           G
Sbjct: 274 G 274


>AF016679-1|AAB66162.1|  539|Caenorhabditis elegans Hypothetical
           protein T28C12.5 protein.
          Length = 539

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = +2

Query: 422 VCKLLVQREVWLPFLHWDF*GLLYFFFT---FIQKMFWIVDSHLLEPMGLWTHRNITFFN 592
           +CKLLV RE+ +   H+   G L F  T        + + D  +LE M  W H NI+ F 
Sbjct: 114 ICKLLVSREIIVVTFHYRL-GFLGFLSTGDDVCPGNYGLFD--MLEAM-RWVHANISSFG 169

Query: 593 G 595
           G
Sbjct: 170 G 170


>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
            protein F59E12.9 protein.
          Length = 1621

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 20/53 (37%), Positives = 20/53 (37%), Gaps = 5/53 (9%)
 Frame = +1

Query: 1144 GTXXLGXPPXGXXEXXXXNPP-RGX---FXXRXPP-RGGGPPXXXGXPXXXXP 1287
            G    G PP G        PP RG         PP RGGGPP   G P    P
Sbjct: 1450 GPPMRGMPPLGMMRGRGGPPPPRGMNSPMRGMPPPMRGGGPPMRGGPPMRGGP 1502


>U00043-6|AAC77507.1|  487|Caenorhabditis elegans Hypothetical
           protein T26A5.4 protein.
          Length = 487

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -2

Query: 659 PQVLELIQGSLSIVKDKTFSEPH*KMLYSCESTSPWVPTDDY 534
           P+VL +I G    +K K   E H K L + +  +PW+  +DY
Sbjct: 296 PRVLMIITGK-GPLKAKYLQEIHEKNLKNVDVLTPWLEAEDY 336


>AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric
           chromosome bindingprotein protein 1 protein.
          Length = 1475

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 16/64 (25%), Positives = 38/64 (59%)
 Frame = -2

Query: 473 PNAEMAATLLVVPKVCKQCKLQVSLNKY*ADKNHTITYFLQ*NGLKKLISNISLAIKLVT 294
           PNA++ A+   + ++  + K+Q+   K  +D+N+++   L  +  K  I+ ++ ++++V 
Sbjct: 538 PNAQLEASQATIQELTSEMKMQLEEVKRQSDENNSLNVHLTSSNEK--IAELTSSLEMVA 595

Query: 293 *QLL 282
            QLL
Sbjct: 596 AQLL 599


>Z74472-4|CAA98942.1|  301|Caenorhabditis elegans Hypothetical protein
            F23H12.4 protein.
          Length = 301

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 18/49 (36%), Positives = 18/49 (36%)
 Frame = +3

Query: 1146 DXGLGGXPXGXXGXFXFXPXPGXXXXKGXPPGGGPPXXXGGXXXXXPPG 1292
            D G  G P G  G       PG    KG P   GPP   G      PPG
Sbjct: 225  DSGPPGPP-GPPGAPGNDGPPGPPGPKGAPGPDGPPGVDGQSGPPGPPG 272


>V00147-1|CAA23463.1|  296|Caenorhabditis elegans protein (
            Caenorhabditis elegansgene Col-1 coding for a collagen.
            ).
          Length = 296

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 18/49 (36%), Positives = 18/49 (36%)
 Frame = +3

Query: 1146 DXGLGGXPXGXXGXFXFXPXPGXXXXKGXPPGGGPPXXXGGXXXXXPPG 1292
            D G  G P G  G       PG    KG P   GPP   G      PPG
Sbjct: 220  DSGPPGPP-GPPGAPGNDGPPGPPGPKGAPGPDGPPGADGQSGPPGPPG 267


>J01047-1|AAA27988.1|  296|Caenorhabditis elegans protein ( C.elegans
            (nematode)collagen 1 (col-1) gene, complete cds. ).
          Length = 296

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 18/49 (36%), Positives = 18/49 (36%)
 Frame = +3

Query: 1146 DXGLGGXPXGXXGXFXFXPXPGXXXXKGXPPGGGPPXXXGGXXXXXPPG 1292
            D G  G P G  G       PG    KG P   GPP   G      PPG
Sbjct: 220  DSGPPGPP-GPPGAPGNDGPPGPPGPKGAPGPDGPPGADGQSGPPGPPG 267


>AC006615-1|AAK68230.1|  149|Caenorhabditis elegans Hypothetical
           protein C36B7.4 protein.
          Length = 149

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +2

Query: 371 YGFCQLNIYSDLLVIYIV-CKLLVQREVWLPFLHWDF 478
           Y  C LN+Y D+   ++V  KL++Q  ++L  L +DF
Sbjct: 35  YNPCSLNVYKDVYKQFVVTMKLILQILLFLVVLTYDF 71


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,898,457
Number of Sequences: 27780
Number of extensions: 531808
Number of successful extensions: 2032
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1885
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3620756926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)