Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_H05
         (1340 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    53   2e-05
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    51   8e-05
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru...    45   0.004
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h...    42   0.048
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    41   0.084
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    40   0.19 
UniRef50_A6DNS7 Cluster: Probable ECF sigma factor; n=1; Lentisp...    34   9.7  
UniRef50_A2SSD8 Cluster: Putative uncharacterized protein; n=1; ...    34   9.7  

>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 52.8 bits (121), Expect = 2e-05
 Identities = 30/57 (52%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
 Frame = +3

Query: 735 CINESANARGEAVCVLGALPXPRSLTRCARSFGCGERYQL-TQRR*XGYPQNQGITQ 902
           CI + A AR EAV VL ALP  RS TRC RS GCG      +  R  G PQ QG+ Q
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQGMAQ 322


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 50.8 bits (116), Expect = 8e-05
 Identities = 22/33 (66%), Positives = 25/33 (75%)
 Frame = +3

Query: 759 RGEAVCVLGALPXPRSLTRCARSFGCGERYQLT 857
           R   +C  G +P PRSLTR ARSFGCGERY+LT
Sbjct: 26  RVSRICDTGDIPLPRSLTRYARSFGCGERYRLT 58


>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
           Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
           (SV40)
          Length = 364

 Score = 45.2 bits (102), Expect = 0.004
 Identities = 19/19 (100%), Positives = 19/19 (100%)
 Frame = +1

Query: 538 DPDMIRYIDEFGQTTTRMQ 594
           DPDMIRYIDEFGQTTTRMQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364


>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
           Alpha-hemolysin - Aeromonas hydrophila
          Length = 59

 Score = 41.5 bits (93), Expect = 0.048
 Identities = 19/21 (90%), Positives = 19/21 (90%)
 Frame = +2

Query: 851 AHSKAVXRLSTESGDNAGXNM 913
           AHSKAV RLSTESGDNAG NM
Sbjct: 39  AHSKAVIRLSTESGDNAGKNM 59


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 40.7 bits (91), Expect = 0.084
 Identities = 16/17 (94%), Positives = 17/17 (100%)
 Frame = +1

Query: 733 SALMNRPTRGERRFAYW 783
           +ALMNRPTRGERRFAYW
Sbjct: 25  AALMNRPTRGERRFAYW 41


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 39.5 bits (88), Expect = 0.19
 Identities = 18/18 (100%), Positives = 18/18 (100%)
 Frame = -2

Query: 787 APNTQTASPRALADSLMQ 734
           APNTQTASPRALADSLMQ
Sbjct: 331 APNTQTASPRALADSLMQ 348


>UniRef50_A6DNS7 Cluster: Probable ECF sigma factor; n=1;
           Lentisphaera araneosa HTCC2155|Rep: Probable ECF sigma
           factor - Lentisphaera araneosa HTCC2155
          Length = 201

 Score = 33.9 bits (74), Expect = 9.7
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +1

Query: 616 EICDAIALFVTIISCNKQVNNNNCIHFMFQVQGEVWEVFSALMNRPTRGERRFAYW 783
           +  DA   F+ I   N  +N+++C   + +V  +VWE  +     P RG  +F YW
Sbjct: 32  DFSDAYRRFIYIALRNNGLNHHDCEEVVQRVMIKVWEKIARFKYNPGRG--KFRYW 85


>UniRef50_A2SSD8 Cluster: Putative uncharacterized protein; n=1;
           Methanocorpusculum labreanum Z|Rep: Putative
           uncharacterized protein - Methanocorpusculum labreanum
           (strain ATCC 43576 / DSM 4855 / Z)
          Length = 109

 Score = 33.9 bits (74), Expect = 9.7
 Identities = 21/55 (38%), Positives = 28/55 (50%)
 Frame = -3

Query: 696 KMNAIVVVNLFIAAYNGYK*SNSITNFTNKAFFSLHSSCGLSKLINVSYHVWIQL 532
           +MNA V +  FIAA      +  +T +   AFF L S  G    ++VSY VW  L
Sbjct: 27  RMNAWVDLAAFIAAV-----ATCVTGYVLWAFFPLGSGRGAMNFLDVSYQVWYDL 76


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 863,519,948
Number of Sequences: 1657284
Number of extensions: 14185321
Number of successful extensions: 33450
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 32273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33443
length of database: 575,637,011
effective HSP length: 103
effective length of database: 404,936,759
effective search space used: 138893308337
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)