Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_H03
         (1297 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4H3.07c |||protein phosphatase Fmp31 |Schizosaccharomyces po...    85   2e-17
SPCC4B3.01 ||SPCP25A2.01c|thiosulfate sulfurtransferase|Schizosa...    34   0.037
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    27   4.3  

>SPAC4H3.07c |||protein phosphatase Fmp31 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 171

 Score = 85.0 bits (201), Expect = 2e-17
 Identities = 43/99 (43%), Positives = 58/99 (58%)
 Frame = +1

Query: 337 NNNXLLIAVSXPDEVKXHGHIPNSINIPLGTISTVLGEMSDKEFNKTYKRPKPNQNTELI 516
           + + +LI V  PDE K  G I  S N+P+G I   + ++SD+EF+KTY   KP     ++
Sbjct: 73  DKSTVLIDVREPDEFK-QGAIETSYNLPVGKIEEAM-KLSDEEFSKTYGFSKPVFEDNVV 130

Query: 517 FYCMVGRRSAKAQESAINLGFKNTKNYQGSWTEWASKGK 633
            YC  GRRS  A +    LG+KN  NY GSW EW+ K K
Sbjct: 131 VYCRSGRRSTTASDILTKLGYKNIGNYTGSWLEWSDKIK 169


>SPCC4B3.01 ||SPCP25A2.01c|thiosulfate
           sulfurtransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 298

 Score = 34.3 bits (75), Expect = 0.037
 Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
 Frame = +1

Query: 391 GHIPNSINIPL--GTISTVLGEMSDKEFNKTY-KRPKPNQNTELIFYCMVGRRSAKAQES 561
           GHIP SINIP    T + +     +++  K +      +++  +I  C  G  ++    +
Sbjct: 205 GHIPTSINIPFTETTAAGITAPKPEEDLEKVFSSHGLTDKSVPIITSCGSGVTASVLFAA 264

Query: 562 AINLGFKNTKNYQGSWTEWASK 627
               GFK+ + Y  SW+ +  +
Sbjct: 265 LKECGFKDVRVYDESWSGYGKR 286


>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = +1

Query: 589 KNYQGSWTEWASK 627
           KN QGSW EW SK
Sbjct: 575 KNMQGSWHEWESK 587


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,631,017
Number of Sequences: 5004
Number of extensions: 41968
Number of successful extensions: 93
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 707435368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)