Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_H03
         (1297 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81592-13|CAB76412.2|  421|Caenorhabditis elegans Hypothetical p...    38   0.015
Z78016-9|CAB76723.2|  421|Caenorhabditis elegans Hypothetical pr...    38   0.015
Z68216-2|CAA92460.2|  367|Caenorhabditis elegans Hypothetical pr...    29   5.4  

>Z81592-13|CAB76412.2|  421|Caenorhabditis elegans Hypothetical
           protein R186.6 protein.
          Length = 421

 Score = 37.9 bits (84), Expect = 0.015
 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
 Frame = +1

Query: 388 HGHIPNSINIPLGTI-STVLGEMSDKEFNK-TYKRPKPNQNTELIFYCMVGRRSAKAQES 561
           +GHI  + NIP+  +    +G+  D +  K  +     +    +I YC    RSA    +
Sbjct: 327 YGHIKGARNIPVDAVYDWAVGQWKDADHLKGLFNNNALSLRKPVIIYCSTSLRSAMVWWA 386

Query: 562 AINLGFKNTKNYQGSWTEW 618
               G+ N K Y G W EW
Sbjct: 387 LTRSGY-NGKIYFGGWPEW 404


>Z78016-9|CAB76723.2|  421|Caenorhabditis elegans Hypothetical
           protein R186.6 protein.
          Length = 421

 Score = 37.9 bits (84), Expect = 0.015
 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
 Frame = +1

Query: 388 HGHIPNSINIPLGTI-STVLGEMSDKEFNK-TYKRPKPNQNTELIFYCMVGRRSAKAQES 561
           +GHI  + NIP+  +    +G+  D +  K  +     +    +I YC    RSA    +
Sbjct: 327 YGHIKGARNIPVDAVYDWAVGQWKDADHLKGLFNNNALSLRKPVIIYCSTSLRSAMVWWA 386

Query: 562 AINLGFKNTKNYQGSWTEW 618
               G+ N K Y G W EW
Sbjct: 387 LTRSGY-NGKIYFGGWPEW 404


>Z68216-2|CAA92460.2|  367|Caenorhabditis elegans Hypothetical
           protein F27C8.2 protein.
          Length = 367

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
 Frame = +1

Query: 319 VVKAXSNNNXLLIAVSXPDEVKXH-GHIPNSINIPLGTISTVLGEMSDKEFNKTYKRPKP 495
           +V A   N    + +S   E++   GHIP+ +  PL   ST + E+  ++  K +  P+ 
Sbjct: 246 IVAAFDENTGSCVGISILREIQNEDGHIPDLLIAPLHAKSTAIAEILLQKSLKKHYNPED 305

Query: 496 NQNTELIFYCMVGRRS 543
           + + + + +  + RRS
Sbjct: 306 DYDFD-VDHLAIYRRS 320


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,126,389
Number of Sequences: 27780
Number of extensions: 242984
Number of successful extensions: 513
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3611117266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)