Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_G24
         (1210 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr...   122   8e-29
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ...    30   0.56 

>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score =  122 bits (295), Expect = 8e-29
 Identities = 65/170 (38%), Positives = 94/170 (55%), Gaps = 5/170 (2%)
 Frame = +3

Query: 78  RFSSYFVIFCSVIIFAQSDVPRP---RGVSLSKASLYLPTK--DFTCFDGTATIPFSYVN 242
           +FS ++ +   ++I +   V      RGV+  K+ LY P    ++ C      I F+ VN
Sbjct: 2   KFSQWYTLTAPLLISSLYTVNAANDLRGVASDKSDLYKPDAKGNWKCLGSDKLISFNQVN 61

Query: 243 DDYCDCFDGSDEPGTSACINGVFHCTNAGHRPQNLPSSRVNDGVCDCCDGTDEYANPTAC 422
           DDYCDC DGSDEPGTSAC NG F C N G+    +PS+RV+D VCDCCDG+DE  +   C
Sbjct: 62  DDYCDCPDGSDEPGTSACHNGKFFCKNTGYISSYIPSNRVDDTVCDCCDGSDE--SLIKC 119

Query: 423 TNICEELGKEARAEAQRVAELHKAGSQLRIDLIEKGNKKRNEMAEQLTQL 572
            N C +  +E  A  +    L K G ++R     +  KK +E+  +  ++
Sbjct: 120 PNTCAQKAREYLATLEEHNRLVKNGLKIREQWALESAKKTDEVKARYKEI 169


>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 528

 Score = 30.3 bits (65), Expect = 0.56
 Identities = 20/69 (28%), Positives = 25/69 (36%), Gaps = 1/69 (1%)
 Frame = +3

Query: 231 SYVNDDYCDCFDGSD-EPGTSACINGVFHCTNAGHRPQNLPSSRVNDGVCDCCDGTDEYA 407
           SY     C    GS  +PG+    +  F C   G R   +P S      CD C GT    
Sbjct: 233 SYSVSSTCSSCHGSGLQPGSHK--STCFACKGTGQRLHFIPPSFHMQTTCDSCGGTGTTI 290

Query: 408 NPTACTNIC 434
            P +    C
Sbjct: 291 PPNSACRSC 299


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,680,889
Number of Sequences: 5004
Number of extensions: 49027
Number of successful extensions: 157
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 653435696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)