Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_G24
(1210 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1206 - 9702128-9702184,9702272-9702323,9702410-9702471,970... 130 2e-30
01_06_0731 - 31555078-31555082,31555750-31555857,31555948-315561... 73 3e-13
04_04_1618 + 34822644-34822915,34823008-34823369,34824721-348247... 29 5.5
03_02_0488 - 8824980-8825267,8825364-8827775 29 7.3
02_05_0484 - 29401195-29401404,29401572-29401755,29401866-294039... 29 7.3
02_05_0075 - 25610386-25610508,25610529-25610583,25610801-256112... 29 7.3
10_02_0091 - 5190536-5191794,5191878-5192030,5192501-5193099,519... 29 9.7
>01_01_1206 -
9702128-9702184,9702272-9702323,9702410-9702471,
9702578-9702665,9703027-9703095,9703224-9703281,
9703895-9703996,9704075-9704179,9704273-9704624,
9706005-9706100,9706427-9706501,9707192-9707370,
9707501-9707740,9707922-9708017,9708193-9708306,
9708428-9708527
Length = 614
Score = 130 bits (315), Expect = 2e-30
Identities = 56/109 (51%), Positives = 72/109 (66%)
Frame = +3
Query: 201 CFDGTATIPFSYVNDDYCDCFDGSDEPGTSACINGVFHCTNAGHRPQNLPSSRVNDGVCD 380
C DG+ +NDD+CDC DG+DEPGTSAC G F+C NAGH P + SSRVNDG+CD
Sbjct: 45 CRDGSGRFARDKLNDDFCDCPDGTDEPGTSACPEGKFYCQNAGHSPITIFSSRVNDGICD 104
Query: 381 CCDGTDEYANPTACTNICEELGKEARAEAQRVAELHKAGSQLRIDLIEK 527
CCDG+DEY + C N C E GK AR + ++ +K+G +R I+K
Sbjct: 105 CCDGSDEYDSNVTCKNTCWEAGKAARDKLKKKVATYKSGVVIRNQEIQK 153
>01_06_0731 -
31555078-31555082,31555750-31555857,31555948-31556166,
31556320-31556415,31557264-31557387
Length = 183
Score = 73.3 bits (172), Expect = 3e-13
Identities = 31/59 (52%), Positives = 38/59 (64%)
Frame = +3
Query: 267 GSDEPGTSACINGVFHCTNAGHRPQNLPSSRVNDGVCDCCDGTDEYANPTACTNICEEL 443
G GTSAC +G F+C NAG P+ L SS VND +CDCCDG+DEY + C N C +
Sbjct: 37 GVSPQGTSACPDGRFYCRNAGDTPRLLFSSVVNDKICDCCDGSDEYESGIRCPNTCRNI 95
Score = 30.7 bits (66), Expect = 2.4
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = +3
Query: 231 SYVNDDYCDCFDGSDE 278
S VND CDC DGSDE
Sbjct: 66 SVVNDKICDCCDGSDE 81
>04_04_1618 +
34822644-34822915,34823008-34823369,34824721-34824796,
34824887-34824980,34825086-34825223
Length = 313
Score = 29.5 bits (63), Expect = 5.5
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 720 TNLKESTEHFNRFDSNNDGELSVXEIKVV 806
T+ E+ + F DSNNDG L+V E + V
Sbjct: 219 TSCAEAEKKFRELDSNNDGYLTVEEARPV 247
>03_02_0488 - 8824980-8825267,8825364-8827775
Length = 899
Score = 29.1 bits (62), Expect = 7.3
Identities = 39/157 (24%), Positives = 59/157 (37%)
Frame = +3
Query: 84 SSYFVIFCSVIIFAQSDVPRPRGVSLSKASLYLPTKDFTCFDGTATIPFSYVNDDYCDCF 263
S F F S + + + R S S+ PT D +C G DD C
Sbjct: 673 SREFAAFISAVSQQEPETSRHSSSQHSSRSMSTPT-DCSCPLGNF---HPNTRDDSC--- 725
Query: 264 DGSDEPGTSACINGVFHCTNAGHRPQNLPSSRVNDGVCDCCDGTDEYANPTACTNICEEL 443
+ + NG FH T+ +P L + G CD C G DE ++ +
Sbjct: 726 --ASSSVLAVLPNG-FHGTSTSGQPLPLIERWKSGGACD-CGGWDE----GCMLSVLSDD 777
Query: 444 GKEARAEAQRVAELHKAGSQLRIDLIEKGNKKRNEMA 554
+E + + A GSQ R DL +G + ++ A
Sbjct: 778 ARENKGDKSTQANQTTDGSQ-RFDLFVQGRSREDKHA 813
>02_05_0484 -
29401195-29401404,29401572-29401755,29401866-29403973,
29404320-29404403,29404507-29404777,29404864-29405117,
29405513-29405722,29406357-29406503
Length = 1155
Score = 29.1 bits (62), Expect = 7.3
Identities = 16/46 (34%), Positives = 27/46 (58%)
Frame = +3
Query: 435 EELGKEARAEAQRVAELHKAGSQLRIDLIEKGNKKRNEMAEQLTQL 572
EEL K RA+ QR +LH+ +L +++ +K K E+ E+ +L
Sbjct: 584 EELLKRERADLQRNLQLHR--HELEMEMEKKQASKERELEEKENEL 627
>02_05_0075 -
25610386-25610508,25610529-25610583,25610801-25611240,
25612951-25613619,25614551-25615870
Length = 868
Score = 29.1 bits (62), Expect = 7.3
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 85 PPIS*YFVPSSYLPSPMCLDPAVYLCLKHLSIYRQKIL 198
PP S + P +Y PSP P + L++ S+Y Q +L
Sbjct: 102 PPSSRHIFPFAYDPSPGAAAPRLLPLLQYSSLYPQPLL 139
>10_02_0091 -
5190536-5191794,5191878-5192030,5192501-5193099,
5193771-5193837,5194177-5195170
Length = 1023
Score = 28.7 bits (61), Expect = 9.7
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = +3
Query: 285 TSACINGVFHCTN-AGHRPQNLPSSRVNDGVCDCCDGTDE-YANPTACTNICE 437
+S+C+N + G+R LP R N + D C+ DE P C +C+
Sbjct: 518 SSSCLNVLSSMDGYVGYRCSCLPGYRGNPYILDGCEDIDECRETPGICKGVCK 570
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,989,503
Number of Sequences: 37544
Number of extensions: 310369
Number of successful extensions: 962
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3701409336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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