Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_G24
         (1210 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   1.8  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     25   1.8  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    23   4.1  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   4.1  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   4.1  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   7.1  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 423 TNICEELGKEARAEAQRVAELHKAGSQLRIDLIEKGNKKR 542
           TNI EE+ KEA+   + +  L     Q + D+ E    KR
Sbjct: 433 TNISEEVLKEAKIIQEEIRTLLDESIQRKSDITELDVSKR 472


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 423 TNICEELGKEARAEAQRVAELHKAGSQLRIDLIEKGNKKR 542
           TNI EE+ KEA+   + +  L     Q + D+ E    KR
Sbjct: 139 TNISEEVLKEAKIIQEEIRTLLDESIQRKSDITELDVSKR 178


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 642 SFLDHSLEALFQPLFFLLQICLF 574
           SFL + L+ALFQP    L + LF
Sbjct: 38  SFLKNQLQALFQPTDNKLAMKLF 60


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 642 SFLDHSLEALFQPLFFLLQICLF 574
           SFL + L+ALFQP    L + LF
Sbjct: 38  SFLKNQLQALFQPTDNKLAMKLF 60


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 642 SFLDHSLEALFQPLFFLLQICLF 574
           SFL + L+ALFQP    L + LF
Sbjct: 38  SFLKNQLQALFQPTDNKLAMKLF 60


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 357 WNSANSEAGVRHLYNGKHRLYKP 289
           WN  +   GVR L    HRL+KP
Sbjct: 87  WN-VSDYGGVRDLRIPPHRLWKP 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,138
Number of Sequences: 438
Number of extensions: 3387
Number of successful extensions: 18
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 41331843
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)