Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_G22
(1195 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A11.03 |||methyltransferase |Schizosaccharomyces pombe|chr ... 49 1e-06
SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr... 44 3e-05
SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces p... 41 3e-04
SPCC4G3.16 |||CMP/dCMP deaminase family|Schizosaccharomyces pomb... 34 0.034
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz... 33 0.059
SPAC25B8.10 |||trans-aconitate 3-methyltransferase |Schizosaccha... 31 0.24
SPAC23H4.09 |cdb4||curved DNA-binding protein Cdb4|Schizosacchar... 31 0.32
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 29 1.3
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo... 27 3.9
SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei... 27 5.1
>SPAC3A11.03 |||methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 247
Score = 49.2 bits (112), Expect = 1e-06
Identities = 39/138 (28%), Positives = 63/138 (45%), Gaps = 1/138 (0%)
Frame = +3
Query: 327 SRIFLKKLINCIEPVQEVHDNLYAELCRAMNNSAIEDYCYRHYVISNDLNNIIIMKETKN 506
+R FLK ++ + H+ L S Y + + I+++E+++
Sbjct: 83 TRAFLKSYFRFLDSIDSGHNERNEALLYTYIESLSSTYIPPVQYSLGEYD--ILIRESRH 140
Query: 507 MVVN-GTTGMRTWEAALMLSDWILCNKELFSSKDVLELGSGIGFTGITLAKFCEPKSVTM 683
+++ GTTG RTWEA + L+++I + S VLELG+G G I AK V
Sbjct: 141 VLLREGTTGARTWEAGMALAEYIY-QHPVQSGMRVLELGAGTGLVSILCAKM--GSIVLA 197
Query: 684 TDCHEDVLQVLCENVDIN 737
TD V + EN +N
Sbjct: 198 TDGDTKVCDGVRENARLN 215
>SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 327
Score = 44.4 bits (100), Expect = 3e-05
Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Frame = +3
Query: 540 WEAALMLSDWILCNKELFS---SKD--VLELGSGIGFTGITLAKFCEPKSVTMTDCHEDV 704
W+A ++ S IL + +S KD VLELGSG G GI++A V+MTD ED
Sbjct: 159 WDAGVVFSKKILSDDWHYSFSNRKDINVLELGSGCGIVGISIASKYPRALVSMTDT-EDA 217
Query: 705 LQVLCENVDINFPSQCKNRSSD 770
++ + +NV+ N + N +SD
Sbjct: 218 IEFMEKNVEKNKSAMSNNITSD 239
>SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 303
Score = 41.1 bits (92), Expect = 3e-04
Identities = 37/126 (29%), Positives = 64/126 (50%), Gaps = 3/126 (2%)
Frame = +3
Query: 369 VQEVHDNLYAELCRAM---NNSAIEDYCYRHYVISNDLNNIIIMKETKNMVVNGTTGMRT 539
V+E D L + +C + + R + +SN ++ ++++E M N T G +T
Sbjct: 61 VEEERDYLVSTICERIAERSGRLAAPTRKREFSLSNGVS--VVLREP-TMTYN-TLGFKT 116
Query: 540 WEAALMLSDWILCNKELFSSKDVLELGSGIGFTGITLAKFCEPKSVTMTDCHEDVLQVLC 719
W +A +LS + ++L +S + LELG+G G GI+ A V TD D+++ +
Sbjct: 117 WGSAPLLSANLPKWEDLSNSINALELGAGTGLVGIS-AAIQLGWQVVCTDL-PDIVENMQ 174
Query: 720 ENVDIN 737
NVD N
Sbjct: 175 YNVDYN 180
>SPCC4G3.16 |||CMP/dCMP deaminase family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 405
Score = 34.3 bits (75), Expect = 0.034
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Frame = +3
Query: 519 GTTGMRTWEAALMLSDWILCNKELFSS----KDVLELGSGI-GFTGITLAKFCEPKSVTM 683
G+TG W+ ++ + W+L +S +LELGSGI G GI L+ F +
Sbjct: 65 GSTGSVLWKTSVKVVPWLLQQSWFMNSLTPKTSILELGSGISGLAGILLSPFV--GNYVA 122
Query: 684 TDCHEDVLQVLCENVDINFPSQCKNRSSDGTTYELD 791
+D + L+ + EN+D +N +SD +ELD
Sbjct: 123 SD-KQLYLKKIRENLD-------QNNASDVEVHELD 150
>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 255
Score = 33.5 bits (73), Expect = 0.059
Identities = 20/56 (35%), Positives = 29/56 (51%)
Frame = +3
Query: 540 WEAALMLSDWILCNKELFSSKDVLELGSGIGFTGITLAKFCEPKSVTMTDCHEDVL 707
W + + L+++I N + +K VLELG+G G I A F K V TD + L
Sbjct: 58 WNSGIELANYIDKNPDTVRAKKVLELGAGAGLPSIVSA-FDGAKFVVSTDYPDPAL 112
>SPAC25B8.10 |||trans-aconitate 3-methyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 256
Score = 31.5 bits (68), Expect = 0.24
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Frame = +3
Query: 543 EAALMLSDWILCNKELFSSKDVLELGSGIG-FTGITLAKFCEPKSVTMTDCHEDVLQVLC 719
E + ++DWI + + +LELG+G G FT +A PK + D + ++L VL
Sbjct: 23 EYPIGITDWITDEFLIDETSIILELGAGTGKFTPRIIAS--HPKEIIAVDVYPEMLDVLR 80
Query: 720 ENVDINFPS-QCKNRSSDGTTYELDNVSXV 806
+ FP+ C+ S+ E ++V V
Sbjct: 81 K----KFPNVDCRAGSAMAIPLEDESVDLV 106
>SPAC23H4.09 |cdb4||curved DNA-binding protein
Cdb4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 381
Score = 31.1 bits (67), Expect = 0.32
Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Frame = +3
Query: 261 ELFVDLTLRSP-VIKKYPISTELSRIFLKKLINCIEPVQEVHD 386
E VD +L +P + KY I+ E+S+ +KK++ +P +++D
Sbjct: 9 ETAVDYSLSNPETVNKYKIAGEVSQNVIKKVVELCQPGAKIYD 51
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 29.1 bits (62), Expect = 1.3
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
Frame = +3
Query: 450 HYVISNDLNNIIIMKETKNMVVNGTTGMRTWEAALMLSD-W---ILCNK--ELFSSK-DV 608
H+ I + L I + ++ +V+ T L +D W LC K L S K D+
Sbjct: 324 HFFIRDSLEVPFIWQHRRDYIVHNNRERNTITPLLSQNDLWNIFFLCTKFWSLHSKKQDI 383
Query: 609 LELGSGIGFTGITLAKFCEPKS 674
L+L S +G + FCE S
Sbjct: 384 LKLYSDLGINDDLVVPFCEAAS 405
>SPAC1805.15c |pub2||ubiquitin-protein ligase
Pub2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 671
Score = 27.5 bits (58), Expect = 3.9
Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Frame = +3
Query: 330 RIFLKKLINCIEPVQEVHDNLYAELCRAMNNSAIEDYCYRHYVISNDLNNII---IMKET 500
RI K L C+E V++V + Y L NN E C V N + ++
Sbjct: 435 RILQKPL--CLEDVKDVDEVYYESLKWIKNNDVDESLCLNFSVEENRFGESVTVDLIPNG 492
Query: 501 KNMVVNGTTGMRTWEA 548
+N+ VN M +A
Sbjct: 493 RNIAVNNQNKMNYLKA 508
>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 27.1 bits (57), Expect = 5.1
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 408 RAMNNSAIEDYCYRHYVISNDLNNIIIM 491
+ NNS E YRH + D+NN +IM
Sbjct: 585 QVFNNSPDETAFYRHMLNHEDVNNSLIM 612
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,174,568
Number of Sequences: 5004
Number of extensions: 58290
Number of successful extensions: 174
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 643474786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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