Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_G22
(1195 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0308 + 2434642-2434736,2435176-2435245,2435435-2435566,243... 60 4e-09
06_03_0878 + 25606788-25606926,25607205-25607279,25607362-256074... 49 8e-06
07_03_1453 - 26649922-26650064,26650148-26650244,26651260-266514... 48 1e-05
03_06_0526 - 34515218-34515372,34515454-34515567,34515651-345157... 42 0.001
03_02_0334 + 7570568-7570709,7571622-7571844,7572178-7572257,757... 42 0.001
03_01_0302 - 2361948-2362649,2363422-2363617,2363873-2363997,236... 34 0.25
12_02_1106 - 26134960-26135115,26135901-26136207,26136421-26137004 31 1.4
04_04_0706 + 27419215-27419371,27419521-27419734,27419818-274199... 31 2.4
02_05_0856 - 32272757-32273494,32273578-32273866,32273961-322743... 31 2.4
05_07_0008 - 27007919-27007944,27008070-27008127,27008218-270082... 29 7.2
04_04_1360 + 32889597-32890343 29 7.2
01_03_0267 + 14433080-14433122,14434560-14434914,14435017-14436136 29 7.2
07_03_0846 - 21983581-21986055 29 9.5
07_01_0567 - 4214196-4214351,4214539-4214845,4215005-4215069,421... 29 9.5
>05_01_0308 +
2434642-2434736,2435176-2435245,2435435-2435566,
2435659-2435722,2435786-2435855,2435952-2436036,
2437572-2437628,2437894-2438010,2438267-2438337,
2438703-2439045
Length = 367
Score = 59.7 bits (138), Expect = 4e-09
Identities = 34/108 (31%), Positives = 56/108 (51%)
Frame = +3
Query: 510 VVNGTTGMRTWEAALMLSDWILCNKELFSSKDVLELGSGIGFTGITLAKFCEPKSVTMTD 689
++ G TG W + L LS++IL ++FS K ELGSG+G G+ L + V +TD
Sbjct: 138 MLEGDTGCSLWPSGLFLSEFILSYPKIFSRKCCFELGSGVGLVGVCL-NYVSASKVILTD 196
Query: 690 CHEDVLQVLCENVDINFPSQCKNRSSDGTTYELDNVSXVDVKMLDWNE 833
L+ + N+++N + C + +G+ +N + V K L W E
Sbjct: 197 GDASTLENMKGNMEMN--NLCVEQ--EGSQLPEENKNKVQCKYLSWEE 240
>06_03_0878 +
25606788-25606926,25607205-25607279,25607362-25607426,
25607504-25607606,25607712-25607762,25608271-25608424,
25608781-25608925,25609039-25609144,25609267-25609415
Length = 328
Score = 48.8 bits (111), Expect = 8e-06
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Frame = +3
Query: 522 TTGMRTWEAALMLSDWIL---CNKELFSSKDVLELGSGIGFTGITLAKFCEPKSVTMTDC 692
+ G++ W+AAL+L+D++L F+ +E+G+G G G+ LA+ K + +TD
Sbjct: 89 SVGLQVWKAALLLTDFVLHKSFTSSEFNGVTAIEIGAGTGLVGLALARVA--KKIFITDR 146
Query: 693 HEDVLQVLCENVDINFPSQCKNRSSDGTTYELD 791
D+L NV +N S K + ELD
Sbjct: 147 GSDILDNCLANVQLN-SSMLKFDEAKACVRELD 178
>07_03_1453 -
26649922-26650064,26650148-26650244,26651260-26651418,
26651478-26651603
Length = 174
Score = 48.4 bits (110), Expect = 1e-05
Identities = 20/57 (35%), Positives = 37/57 (64%)
Frame = +3
Query: 540 WEAALMLSDWILCNKELFSSKDVLELGSGIGFTGITLAKFCEPKSVTMTDCHEDVLQ 710
W A++++ ++ + E ++ELGSG+G TGI ++FC K V +TD +++VL+
Sbjct: 98 WPGAVLMNTYLSEHPETVKDHSIIELGSGVGITGILCSRFC--KEVVLTDHNDEVLE 152
>03_06_0526 -
34515218-34515372,34515454-34515567,34515651-34515722,
34515832-34515974,34516457-34516635,34517798-34517874,
34517994-34518150
Length = 298
Score = 41.9 bits (94), Expect = 0.001
Identities = 22/66 (33%), Positives = 34/66 (51%)
Frame = +3
Query: 540 WEAALMLSDWILCNKELFSSKDVLELGSGIGFTGITLAKFCEPKSVTMTDCHEDVLQVLC 719
W + +DW++ NK + + +LELGSG G I L K + +T TD + +Q
Sbjct: 111 WPGTFLFADWLVKNKSILHGRRILELGSGTGALAIFLRKAFQ-VDITTTDYDDGEIQ--- 166
Query: 720 ENVDIN 737
EN+ N
Sbjct: 167 ENIAYN 172
>03_02_0334 +
7570568-7570709,7571622-7571844,7572178-7572257,
7572869-7572929,7573670-7573796
Length = 210
Score = 41.9 bits (94), Expect = 0.001
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Frame = +3
Query: 462 SNDLNNIIIMKETKNMVVNGTTGMRT-WEAALMLSDWILCNKELFSSKDVLELGSGIGFT 638
S +LN+I+ N TTG+ W + +L+ + + + ++F SK VLELGSG G
Sbjct: 128 SLELNDIV----ASNRYNIDTTGLVCCWPSEEVLAYYCINHSDMFRSKKVLELGSGYGLA 183
Query: 639 GITLAKFCEPKSVTMTDCHEDVL 707
G+ +A + V ++D + V+
Sbjct: 184 GLAIAASTDADEVVISDGNPQVV 206
>03_01_0302 -
2361948-2362649,2363422-2363617,2363873-2363997,
2364118-2364180,2364445-2364495,2364597-2364668,
2364779-2364886,2365031-2365135,2365505-2365555,
2365971-2365995,2366234-2366258,2366352-2366439
Length = 536
Score = 33.9 bits (74), Expect = 0.25
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +3
Query: 525 TGMRTWEAALMLSDWILCNKELFSSKDVLELGSG-IGFTGITLAKFCEPKSVTMTDCHED 701
TG+ WE+A + + N + + K VLELG G G + A + V TD +
Sbjct: 332 TGLMLWESAQFMCSVLAENPSILAGKRVLELGCGSAGICSMVAATVAQ--FVVATDGDAE 389
Query: 702 VLQVLCENVDIN 737
L +L EN N
Sbjct: 390 SLDLLRENTASN 401
>12_02_1106 - 26134960-26135115,26135901-26136207,26136421-26137004
Length = 348
Score = 31.5 bits (68), Expect = 1.4
Identities = 14/36 (38%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Frame = +3
Query: 585 ELFSSK-DVLELGSGIGFTGITLAKFCEPKSVTMTD 689
+L+S K V+++G G GFT + + K +P++VT+ D
Sbjct: 117 DLYSRKLRVVDVGGGTGFTTLGIVKRVDPENVTLLD 152
>04_04_0706 +
27419215-27419371,27419521-27419734,27419818-27419913,
27420006-27420123,27420211-27420384,27420633-27420803,
27420932-27420987,27421125-27421214,27421296-27421444,
27421640-27421722,27421830-27421958,27422063-27422137,
27422248-27422416,27422965-27423104,27423191-27423298,
27423603-27423783,27424445-27424542,27424639-27424728,
27424881-27425034,27425376-27425431,27425483-27425533,
27425651-27425732,27425821-27425995,27426748-27426823,
27426951-27427121,27427198-27427269,27427350-27427454,
27427948-27428037,27428703-27428908,27428989-27429190,
27429294-27429473,27429858-27429925,27430005-27430341,
27430428-27430637,27430765-27431448,27431537-27431940,
27432495-27432542,27432777-27433023,27433381-27433602,
27433796-27434026
Length = 2122
Score = 30.7 bits (66), Expect = 2.4
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -1
Query: 298 ITGLLNVKSTNSSCHDHVISFTESGSI*KFVQ 203
+ L+ S++ SCH H+I E+ +I KFV+
Sbjct: 352 VESLVGYSSSDDSCHSHLIEIVETLNIEKFVE 383
>02_05_0856 -
32272757-32273494,32273578-32273866,32273961-32274312,
32275232-32275850
Length = 665
Score = 30.7 bits (66), Expect = 2.4
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Frame = +3
Query: 444 YRHYVISNDLNNIIIMKETK---NMVVNGTTGMRTWEAALMLSDWILCNKELFSSKDVLE 614
Y H I NDL + +K+ K N++V G + WE AL L W+ + + K VLE
Sbjct: 339 YEHPHI-NDLAYMPAVKDGKFGFNLLVGGFISPKRWEEALPLDAWVPGDDIIPVCKAVLE 397
Query: 615 LGSGIGFTG 641
+G G
Sbjct: 398 AYCDLGTRG 406
>05_07_0008 -
27007919-27007944,27008070-27008127,27008218-27008292,
27008417-27008470,27008574-27008840,27008913-27009193,
27009268-27009409,27009491-27009601,27009975-27010013,
27010173-27010310,27010415-27010552,27011438-27011562,
27011702-27011723
Length = 491
Score = 29.1 bits (62), Expect = 7.2
Identities = 31/83 (37%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Frame = +3
Query: 591 FSSKDVLELGSGIG-FTGITLAKFCEPKSVTMTDCHEDVLQVLCENVD---INFPSQCKN 758
+ K VLELG+GIG FTG LAK E V D E V++ EN++ N C +
Sbjct: 57 YKGKSVLELGAGIGRFTG-ELAK--EAGHVLALDFIESVIK-KNENINGHHKNITFMCAD 112
Query: 759 RSSDGTTYELDNVSXVDVKMLDW 827
+S T E DN +D+ +W
Sbjct: 113 VTSPDLTIE-DN--SIDLIFSNW 132
>04_04_1360 + 32889597-32890343
Length = 248
Score = 29.1 bits (62), Expect = 7.2
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Frame = +3
Query: 525 TGMRTWEAALMLSDWIL-C-NKELFSSKDVLELGSGIGFTGITLAKFCEPKSVTMTDCHE 698
TG W+++L+L+ + C + VLELG+G G GI +TD
Sbjct: 43 TGSWLWDSSLVLASHLASCVHHHHLRGATVLELGAGTGLPGIAAVACLGAARCVLTDV-R 101
Query: 699 DVLQVLCENVDIN 737
+L L N D N
Sbjct: 102 PLLPGLRANADAN 114
>01_03_0267 + 14433080-14433122,14434560-14434914,14435017-14436136
Length = 505
Score = 29.1 bits (62), Expect = 7.2
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Frame = +3
Query: 444 YRHYVISNDLNNIIIMKETK---NMVVNGTTGMRTWEAALMLSDWILCNKELFSSKDVLE 614
Y H I NDL + +K K N++V G + WE AL L W+ + + K VLE
Sbjct: 148 YEHPHI-NDLAYMPAVKGGKFGFNLLVGGFISPKRWEEALPLDAWVPGDDIIPVCKAVLE 206
Query: 615 LGSGIGFTG 641
+G G
Sbjct: 207 AYRDLGTRG 215
>07_03_0846 - 21983581-21986055
Length = 824
Score = 28.7 bits (61), Expect = 9.5
Identities = 28/105 (26%), Positives = 39/105 (37%), Gaps = 1/105 (0%)
Frame = +3
Query: 513 VNGTTGMRTWEAALMLSDWILCNKELFSSKDVLELGSGIGFTGITLAKFCEP-KSVTMTD 689
VNG TW A +WIL + + +V L G + + FC K +
Sbjct: 264 VNGQIKQWTWVPAS--ENWILFWSQPRTQCEVYGLCGAYGSCNLNVLPFCNCIKGFSQKF 321
Query: 690 CHEDVLQVLCENVDINFPSQCKNRSSDGTTYELDNVSXVDVKMLD 824
+ LQ N P QC+ SS T S V V++ D
Sbjct: 322 QSDWDLQDFTGGCKRNVPLQCQTNSSSAQTQPDKFYSMVSVRLPD 366
>07_01_0567 -
4214196-4214351,4214539-4214845,4215005-4215069,
4215406-4215471,4215594-4215639,4215671-4216200
Length = 389
Score = 28.7 bits (61), Expect = 9.5
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +3
Query: 606 VLELGSGIGFTGITLAKFCEPKSVTMTDCHEDVLQVLCENVDIN 737
V+++G G GFT + + K + ++VT+ D L+ + V +N
Sbjct: 107 VVDVGGGTGFTTLGIVKHVDNENVTLLDQSPHQLEKARQKVALN 150
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,608,774
Number of Sequences: 37544
Number of extensions: 334288
Number of successful extensions: 720
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3643211076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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