Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_G21
(1228 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 38 0.002
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 31 0.25
SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5 |Schizo... 31 0.43
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po... 31 0.43
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 30 0.75
SPAC140.04 |||conserved fungal protein|Schizosaccharomyces pombe... 29 1.00
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 29 1.3
SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit Alp... 28 2.3
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom... 28 2.3
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 28 3.0
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 27 5.3
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 27 5.3
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo... 27 7.0
SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr ... 26 9.3
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ... 26 9.3
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 38.3 bits (85), Expect = 0.002
Identities = 38/161 (23%), Positives = 73/161 (45%), Gaps = 3/161 (1%)
Frame = +3
Query: 348 IEVAAQIASFCKDLGYKNDVGYQTFLYYNEAELRQVFMFLIERLPN-EGKQSSVSASLKT 524
+++ + I +D+ + V Q L EL++ F+ ER N + K + +
Sbjct: 881 LQLQSNITELKQDITLQRTVRNQ--LEIQTTELKERLKFMEERQENLQSKLIAANKDTTQ 938
Query: 525 NQSTL-MKDVSNKISEEMEKIWVPHCCKPNEQQKGITSTKNNVHLYNTLENEKDLIQKLI 701
N + ++ +S ++ EK+ + K N QQK + S K + T E K L++ I
Sbjct: 939 NPDNVEVEAISIELERTKEKLRMAELEKSNIQQKYLASEKTLEMMNETHEQFKHLVESEI 998
Query: 702 HIQEMNTNSRDTKAQDVEMQKE-SKLKTEAFTKEHNKTLKE 821
+E S ++ D+ + E K + E+ +KE K L++
Sbjct: 999 STREEKITSLRSELLDLNKRVEVLKEEKESSSKELAKQLED 1039
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 31.5 bits (68), Expect = 0.25
Identities = 27/124 (21%), Positives = 59/124 (47%), Gaps = 1/124 (0%)
Frame = +3
Query: 483 NEGKQSSVSASLKTNQSTLMKDVSNKISEEMEKIWVPHCCKPNEQQKGITSTKNNVHLYN 662
+ ++S S S+ N S + + S K ++ + P+ +E + ++ L N
Sbjct: 8 DSSRKSPPSDSVVKNSSPIDYEHSLKSLQDERTLNYPNKQFNSENPSSYYNMDDSGELCN 67
Query: 663 TLENEKDLIQKLIHIQEMNTNSRDTKAQDVEMQKESKLKTEAFTKEHNKTL-KELKETAI 839
E EKD ++ +IH +++ AQD + S +K+H++TL +L ++ I
Sbjct: 68 -FELEKDSLESMIHESSTALSAQSNTAQDGDQLASS----STISKDHSETLDNKLNDSKI 122
Query: 840 VLRQ 851
++++
Sbjct: 123 LIKK 126
>SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 411
Score = 30.7 bits (66), Expect = 0.43
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Frame = +3
Query: 426 YYNEAELRQVFMFLIERLPNEGKQSSVSASLK---TNQSTLMKDVSNKISEEMEKI 584
YY + L Q L+ R P +QSSVS LK TN+S ++K+ S+ + + +++
Sbjct: 156 YYQASLLLQESDQLLSRFPLMKRQSSVSLLLKLNITNRSRIIKETSSYLLSQEDQL 211
>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 875
Score = 30.7 bits (66), Expect = 0.43
Identities = 28/130 (21%), Positives = 61/130 (46%)
Frame = +3
Query: 150 KNXKLEAVXSIILHFLRQLNLKIXDNVKXMCXVSVEFIIEAASKCLNAINPSLKVPQKLP 329
K+ +++ V I+ H LR L+ K V+ C + ++ + + + +LK +KL
Sbjct: 71 KDPEIDIVQPILKHILRGLDAK-DKTVRYRCCQIIARVVNCVKEIDDDLYNTLK--EKLL 127
Query: 330 KGISHRIEVAAQIASFCKDLGYKNDVGYQTFLYYNEAELRQVFMFLIERLPNEGKQSSVS 509
+ R E ++ + + D G + E ++R + +FL++ P+ + SV
Sbjct: 128 SRVLDR-ESIVRLEAVVALSRLQEDTGDE------ENDVRNILLFLLQNDPSSEVRRSVL 180
Query: 510 ASLKTNQSTL 539
+++ + STL
Sbjct: 181 LNIEVSNSTL 190
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 29.9 bits (64), Expect = 0.75
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 10/82 (12%)
Frame = +3
Query: 615 QQKGITSTKNNVHLYNTLENEKDLIQKLIHIQEMN--------TNSRD-TKAQDVEMQKE 767
Q + I KN++ L + ++K L + I +QE+ NS D + D+ + E
Sbjct: 471 QNREIDEEKNHLRLLASKNSDKALAETNIRLQEVTKELETLRMKNSNDLNEIHDLREENE 530
Query: 768 S-KLKTEAFTKEHNKTLKELKE 830
LK ++ TKE ++ + EL++
Sbjct: 531 GLTLKIDSITKEKDRLINELEQ 552
>SPAC140.04 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 295
Score = 29.5 bits (63), Expect = 1.00
Identities = 28/125 (22%), Positives = 58/125 (46%), Gaps = 8/125 (6%)
Frame = +3
Query: 483 NEGKQSSVSASLKTNQSTLMKDVSNKISEEMEKIWVPHCCKPNE--QQKGITSTKNNVHL 656
N GK+S + S K+N + L + + K E EK + H ++ + +TK + +
Sbjct: 2 NVGKKSEIQVSAKSNLNFLNELIEEKKRYEDEKRKISHQKYTDKLLEANDNETTKRKLLV 61
Query: 657 YNTLENEKDLIQKLI---HIQEMNTNSRDTKAQDVEMQKESKLKTEAFTKEHNKTLK--- 818
++ K+ +I +E + +A + E+ + S+L+ E K++++
Sbjct: 62 KQKRKSNKEFQSNIIKKRKDEERKGTLKTEQANEEELLQRSRLELERKAKKYDQYAAGEL 121
Query: 819 ELKET 833
E+KET
Sbjct: 122 EIKET 126
>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1052
Score = 29.1 bits (62), Expect = 1.3
Identities = 28/120 (23%), Positives = 55/120 (45%), Gaps = 8/120 (6%)
Frame = +3
Query: 495 QSSVSASLKTNQSTLMKDVSNKI-----SEEMEKIWVPHCCKP-NEQQKGITSTKNNV-H 653
Q+ V S+ QST D NK+ +++ + + + C+ N+ G + V
Sbjct: 819 QNDVLESVVVEQSTTTDDCENKVYEGQMNDKNSSLDMVNACEGINQTAIGFVEKPDKVTE 878
Query: 654 LYNTLENEKDLIQKLIHIQEMNTNSRDTKAQDVEMQKE-SKLKTEAFTKEHNKTLKELKE 830
L + E D+ Q I + E N + +A++ +Q E + + + K+ + +KE+KE
Sbjct: 879 LIDEAEENIDISQD-ISMTETNAVDDEVQAENSILQDEVEETRQDDIEKDELEDIKEVKE 937
>SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit
Alp13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 28.3 bits (60), Expect = 2.3
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = +3
Query: 789 FTKEHNKTLKELKETAIVLRQK*TLXK 869
+T+E+ KT KELK AI RQK T K
Sbjct: 59 WTEENLKTQKELKNAAISTRQKPTSKK 85
>SPBC18H10.09 |||zinc finger protein, zf-CHY
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 28.3 bits (60), Expect = 2.3
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +3
Query: 549 VSNKISEEMEKIWVPHCCKPNEQQKGITST 638
V NK S + +WVP PN + GI T
Sbjct: 205 VCNKCSNTLRLVWVPGVIHPNNARLGILHT 234
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 27.9 bits (59), Expect = 3.0
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +1
Query: 553 ATRFLRKWKKYGYHIVANPMSNKKESLQ 636
A+ L WK+ Y+I+AN S++KE+L+
Sbjct: 1360 ASNALVAWKELLYNIIANHYSDQKEALR 1387
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 27.1 bits (57), Expect = 5.3
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 565 LRKWKKYGYHIVANPMSNKKESLQQKTMFICIIH 666
LRKW+ Y +++ KK+ L+Q + F+C H
Sbjct: 3272 LRKWRSYFERLLSKVP--KKQYLEQYSSFLCEFH 3303
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 27.1 bits (57), Expect = 5.3
Identities = 21/103 (20%), Positives = 39/103 (37%), Gaps = 1/103 (0%)
Frame = +3
Query: 525 NQSTLMKDVSNKISEEMEKIWVPHCCKPNEQQKGITSTKNNVHLYN-TLENEKDLIQKLI 701
N+ ++ D+ NK+SEE ++ E Q + KN + N + D + +
Sbjct: 796 NKENIISDLKNKLSEESTRL--------QELQSQLNQDKNQIETLNERISAAADELSSME 847
Query: 702 HIQEMNTNSRDTKAQDVEMQKESKLKTEAFTKEHNKTLKELKE 830
I + N Q +E KEH + + L++
Sbjct: 848 SINKNQANELKLAKQKCSNLQEKINFGNKLAKEHTEKISSLEK 890
Score = 26.2 bits (55), Expect = 9.3
Identities = 30/122 (24%), Positives = 50/122 (40%)
Frame = +3
Query: 465 LIERLPNEGKQSSVSASLKTNQSTLMKDVSNKISEEMEKIWVPHCCKPNEQQKGITSTKN 644
L ER+ + S S+ NQ+ +K K S EKI + +K I+S +
Sbjct: 832 LNERISAAADELSSMESINKNQANELKLAKQKCSNLQEKINFGNKLAKEHTEK-ISSLEK 890
Query: 645 NVHLYNTLENEKDLIQKLIHIQEMNTNSRDTKAQDVEMQKESKLKTEAFTKEHNKTLKEL 824
+ L + L ++L ++ N + + D KE + E F KE ++ L E
Sbjct: 891 D--LEAATKTASTLSKELKTVKSENDSLKSVSNDD--QNKEKSVNNEKF-KEVSQALAEA 945
Query: 825 KE 830
E
Sbjct: 946 NE 947
>SPAC6G10.07 |||nuclear cap-binding complex large subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 780
Score = 26.6 bits (56), Expect = 7.0
Identities = 20/80 (25%), Positives = 37/80 (46%)
Frame = +3
Query: 561 ISEEMEKIWVPHCCKPNEQQKGITSTKNNVHLYNTLENEKDLIQKLIHIQEMNTNSRDTK 740
ISE E IWV H N K + S +V +T+E + +Q+ ++ +T +
Sbjct: 703 ISENAENIWVSHWL--NLMLKYVESNFLSVK-KDTIEEANEPVQENTSEEQEDTKMQPVD 759
Query: 741 AQDVEMQKESKLKTEAFTKE 800
A D + + ++ +A +E
Sbjct: 760 AVDEQPSENNQTAADATNEE 779
>SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 384
Score = 26.2 bits (55), Expect = 9.3
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +3
Query: 759 QKESKLKTEAFTKEHNKTLKELKETAIVLRQK 854
QK L AFT +H +TLKEL++ +QK
Sbjct: 292 QKNMILVPIAFTSDHIETLKELEDYIEDAKQK 323
>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 550
Score = 26.2 bits (55), Expect = 9.3
Identities = 20/100 (20%), Positives = 46/100 (46%), Gaps = 3/100 (3%)
Frame = +3
Query: 531 STLMKDVSNKISEE---MEKIWVPHCCKPNEQQKGITSTKNNVHLYNTLENEKDLIQKLI 701
S + N+++E+ +EK+ + EQ++G + L N+ + ++L++ ++
Sbjct: 304 SVFESKLKNELTEQAITLEKLHLQSIKAQVEQERGSRLGRLQ-ELRNSFQQLQELVRVVL 362
Query: 702 HIQEMNTNSRDTKAQDVEMQKESKLKTEAFTKEHNKTLKE 821
H T D ++ K+ + + ++H TLKE
Sbjct: 363 HENGRVTRLVDVSNTLDDLNKDMRFHKLSEVRQHVNTLKE 402
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,544,786
Number of Sequences: 5004
Number of extensions: 69541
Number of successful extensions: 232
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 665388788
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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