Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_G21
(1228 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1197 + 31672019-31672325,31672431-31672740,31673334-316783... 34 0.26
02_05_0702 - 31027908-31027958,31028062-31029311,31029665-310298... 34 0.26
10_08_0043 - 14390398-14391531,14391850-14393691,14393800-143968... 32 0.80
08_01_0521 + 4540627-4540794,4541822-4541836,4541957-4543036 32 0.80
07_03_0941 - 22763733-22763970,22764077-22764213,22764282-227644... 31 1.4
04_04_0965 - 29762388-29762564,29764272-29766361,29766567-297671... 30 4.3
09_03_0170 - 13035371-13036504 29 7.5
10_01_0147 - 1722947-1723168,1723268-1723464,1723654-1723690,172... 29 9.9
>04_04_1197 + 31672019-31672325,31672431-31672740,31673334-31678335,
31678677-31678715
Length = 1885
Score = 33.9 bits (74), Expect = 0.26
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = -1
Query: 910 LEPEIFNIHNISF-TX*SVYFCRNTIAVSFNSLRVLLC 800
L+ ++ HN+ F T ++Y CRN +S SLR L+C
Sbjct: 1159 LDDKVLLFHNLRFLTSLAIYGCRNLATISIESLRQLVC 1196
>02_05_0702 -
31027908-31027958,31028062-31029311,31029665-31029842,
31029955-31030017,31031597-31031704,31031772-31031836,
31031928-31032015,31032104-31032157,31032234-31032380,
31033358-31033429,31034077-31034226,31034317-31034430,
31034762-31034875,31035925-31036077,31037437-31037529,
31038202-31038318,31038984-31039086,31039192-31039376,
31039448-31039522,31040451-31040534,31041547-31041588,
31041668-31041847,31042109-31042162,31042239-31042280,
31042869-31042967,31043040-31043174,31043325-31043427,
31045061-31045134,31045227-31045270,31045393-31045471,
31045592-31045705,31045842-31045946,31046027-31046161,
31046447-31046546,31046870-31046883,31046936-31047004,
31047079-31047182,31047299-31047347,31047931-31048023,
31048102-31048210,31048619-31048755,31048851-31048928,
31049015-31049104,31049402-31049467,31049546-31049638,
31049711-31049839,31050024-31050122,31051366-31051512,
31051605-31051910
Length = 2050
Score = 33.9 bits (74), Expect = 0.26
Identities = 17/79 (21%), Positives = 45/79 (56%), Gaps = 5/79 (6%)
Frame = +3
Query: 624 GITSTKNNVHLYNTLENEKDLIQKLIHIQ-EMNTNSRDTKAQDVEMQKESKLKTEAFTKE 800
G+ +NN+H + T + L+Q+ + ++ +++ S D +D+E+++ +++ + T +
Sbjct: 595 GVPEVENNIHEHMTFNDINGLVQQNVQLRNQVHLLSADLDKRDMELRESFQIELKKITDD 654
Query: 801 H----NKTLKELKETAIVL 845
K +K+ +E AI++
Sbjct: 655 AASRVEKVMKKSEEQAIMI 673
>10_08_0043 -
14390398-14391531,14391850-14393691,14393800-14396825,
14397510-14397609
Length = 2033
Score = 32.3 bits (70), Expect = 0.80
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Frame = +3
Query: 663 TLENEKDLIQKLIHIQEMNTNSRDTKA---QDVEMQKESKLKTEAFTKEHNKTLKELKET 833
TLE +K L KL ++ NT+ + A QD+ + +E + TE KE + L LKE
Sbjct: 778 TLETKK-LKVKLSEVENSNTDLENIVAKHTQDIHVLREKNVSTELMIKELHHELDALKEL 836
Query: 834 AIVLRQK 854
+ L +
Sbjct: 837 NVKLESE 843
>08_01_0521 + 4540627-4540794,4541822-4541836,4541957-4543036
Length = 420
Score = 32.3 bits (70), Expect = 0.80
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +3
Query: 756 MQKESKLKTEAFTKEHNKTLKELKETAIVLRQK*TLXKVK 875
+QK +K +AF KE + L+ELK T LR + T K K
Sbjct: 55 LQKNGLMKEKAFNKEMKRKLEELKATTSSLRTQKTDLKTK 94
>07_03_0941 -
22763733-22763970,22764077-22764213,22764282-22764470,
22765238-22765756,22766319-22767357,22767665-22767759,
22768253-22768357
Length = 773
Score = 31.5 bits (68), Expect = 1.4
Identities = 13/57 (22%), Positives = 32/57 (56%)
Frame = +3
Query: 528 QSTLMKDVSNKISEEMEKIWVPHCCKPNEQQKGITSTKNNVHLYNTLENEKDLIQKL 698
Q L++D+ + + E+E +W HC + ++K + + + + Y+T +++ + KL
Sbjct: 89 QGILVQDLMSGVCRELE-MWQKHCKDEHVEEKDLQTELDEILSYDTQDSKVSFLDKL 144
>04_04_0965 -
29762388-29762564,29764272-29766361,29766567-29767170,
29768395-29768637,29768704-29770203
Length = 1537
Score = 29.9 bits (64), Expect = 4.3
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -2
Query: 615 AHWVCNNVVPIFFPFPQKSC 556
A+WVCN+ +F P P++ C
Sbjct: 732 AYWVCNSSTGVFRPLPRRRC 751
>09_03_0170 - 13035371-13036504
Length = 377
Score = 29.1 bits (62), Expect = 7.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 646 LFFVEVIPFCCSLGLQQCGTHIFS 575
L FV +PFC L CGT+I+S
Sbjct: 325 LAFVPKLPFCADTYLDTCGTNIWS 348
>10_01_0147 -
1722947-1723168,1723268-1723464,1723654-1723690,
1724688-1725584
Length = 450
Score = 28.7 bits (61), Expect = 9.9
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 10/69 (14%)
Frame = -1
Query: 643 FFVEVIPFCCSLG---LQQCGTHIFSISSEILLLTSFINVDWFVLRDA-------ETELC 494
FF ++ C +L L QCG H ISS L + +F +V +++ D +T +
Sbjct: 171 FFAQLEAGCPALEDLFLHQCGVHDDEISSHTLKVLTFDSVFFYMPMDTVEFTLLNKTSIS 230
Query: 493 FPSLGSLSI 467
PS+ SL+I
Sbjct: 231 LPSVTSLTI 239
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,630,635
Number of Sequences: 37544
Number of extensions: 363179
Number of successful extensions: 943
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3771247248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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