Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_G20
         (1285 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    29   1.8  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    28   2.4  
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo...    28   3.2  
SPBC8D2.17 |||alpha-1,2-galactosyltransferase|Schizosaccharomyce...    27   7.4  

>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 19/49 (38%), Positives = 28/49 (57%)
 Frame = -2

Query: 621 IDILRYSIIYLFSGFCFI*SYFFFLYSTIVDTIFHVFLHDSLLFNSLRF 475
           ID+ R    +LFS FC I +Y+    ST + T+F +FL+  L F  + F
Sbjct: 399 IDLWRPFSFWLFSIFCTIAAYYLVSSSTKI-TVF-IFLYLMLTFIGIIF 445


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 12/62 (19%), Positives = 31/62 (50%)
 Frame = +1

Query: 481 ERIKQKAIMEKNMKNSINNRTIEKKEIGSNKAKPTKQVNDRISQNINIYSNTIEVFKLNN 660
           E++KQ+ + ++N ++ + +  +  ++   N+ KP   + + +S N +       +F L  
Sbjct: 809 EQLKQEYLTKRNFESKLKSSAVSSRKPTFNEVKPANLLAEDLSDNEDDIDRKQGLFSLAK 868

Query: 661 KN 666
            N
Sbjct: 869 AN 870


>SPAC4F10.09c |||ribosome biogenesis protein Noc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 15/55 (27%), Positives = 29/55 (52%)
 Frame = +1

Query: 475 KPERIKQKAIMEKNMKNSINNRTIEKKEIGSNKAKPTKQVNDRISQNINIYSNTI 639
           K ++ K+   + K  + ++N+R I     G N+A P  +VN   S+  + + NT+
Sbjct: 347 KSQKRKKDEDLRKEAEENVNSRVISAVLTGVNRAYPFAEVN---SEKFDKHMNTL 398


>SPBC8D2.17 |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 351

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
 Frame = +1

Query: 451 KSVKTQILKPERIKQKAIMEK---NMKNSINNRTIEKKEIGSNKAKPTKQVNDRISQNIN 621
           +S+K ++LKPE++ Q  ++      +KN I  RT  K +        T   N   ++++ 
Sbjct: 158 ESLKDRVLKPEKLSQHLLLNSPIDPLKNYI--RTRRKMDPSDVFVITTSDYNGISTRSLL 215

Query: 622 IYSNTIEVFKLNNKNNTL 675
           I +N    F L+  N  L
Sbjct: 216 IKNNNFAPFLLDAWNEPL 233


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,683,911
Number of Sequences: 5004
Number of extensions: 39545
Number of successful extensions: 124
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 699486656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)