Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_G20
         (1285 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1437 - 27096364-27097252,27098931-27099022,27099382-270996...    33   0.37 
02_02_0389 - 9617342-9617439,9617531-9617657,9619168-9619265,961...    29   6.0  
12_02_0350 + 17826907-17827041,17828018-17828070,17828305-178284...    29   7.9  

>08_02_1437 -
           27096364-27097252,27098931-27099022,27099382-27099654,
           27099872-27100819
          Length = 733

 Score = 33.5 bits (73), Expect = 0.37
 Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
 Frame = +1

Query: 403 SLLQMNEMEKXCMFCKKSVKT---QILKPERIKQKAIMEKNMKNSINNRTIEKKEIGSNK 573
           S L + + +      K SVK    +I KP+  K  + + K   NSI    I+KKE+ S+K
Sbjct: 142 STLSLEKEQSKLEKLKPSVKNNGAEIKKPQLTKSNSSLSKQALNSI----IDKKEVVSSK 197

Query: 574 AKPTKQVNDRISQNINIYS 630
            KPT       S   ++YS
Sbjct: 198 TKPT-SARSTPSSPTSVYS 215


>02_02_0389 -
           9617342-9617439,9617531-9617657,9619168-9619265,
           9619341-9619508,9620883-9620992,9622449-9622501,
           9622638-9622859
          Length = 291

 Score = 29.5 bits (63), Expect = 6.0
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 753 FTQTCILVLPLFIIVYYFWWFF 688
           F   C+++ P+ +  Y  WWFF
Sbjct: 88  FMTGCVILFPIAVTFYITWWFF 109


>12_02_0350 +
           17826907-17827041,17828018-17828070,17828305-17828414,
           17828629-17828796,17828898-17829155,17829295-17829395
          Length = 274

 Score = 29.1 bits (62), Expect = 7.9
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 753 FTQTCILVLPLFIIVYYFWWFFHL 682
           F   C+++LP+ I  Y  WWF  +
Sbjct: 59  FMTGCVILLPIAITFYTTWWFIRV 82


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,100,229
Number of Sequences: 37544
Number of extensions: 216724
Number of successful extensions: 411
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3992400636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)