Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_G19
         (1280 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.03 |||WD repeat protein|Schizosaccharomyces pombe|chr 3|...    31   0.45 
SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces...    27   4.2  
SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomy...    26   9.7  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    26   9.7  

>SPCC4G3.03 |||WD repeat protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 347

 Score = 30.7 bits (66), Expect = 0.45
 Identities = 19/56 (33%), Positives = 30/56 (53%)
 Frame = -3

Query: 420 VLSFDHDVPVRSLHRYLLRREMLNIQIDLEFVSVSLDGRTDVASGSCQVSPRTYIF 253
           + S DH + V  L   LLR++ L+  +++   SVS DGR  V  G    SP+ + +
Sbjct: 134 ISSNDHTIKVVDLEHGLLRKQ-LHFPVNMNHASVSNDGRFMVCVGD---SPQVFFY 185


>SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 366

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
 Frame = +1

Query: 133 LLPYLLDDLRPHRIRDQLFGMDLS--PDDFLADIIDRPIVRMKYVRPWRNLAAAARDVGS 306
           L  Y  D+ RP  + D+L  +      D  +A  I+  I +     P++ +  A   +  
Sbjct: 82  LSKYRDDNYRP--MFDELLAVHFQWGTDSAVAKTIEESISKNYPKCPFKVIGEAEL-LNR 138

Query: 307 TIKTD-RDKLQINLDVQHFTPEEIS 378
           TI TD R  ++IN D + F PE IS
Sbjct: 139 TIATDSRGNIEINADNEKFNPEVIS 163


>SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 482

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 268 WRNLAAAARDVGSTIKTDRDKLQINLDVQHFTPE-EISVK 384
           W NLA A + +G T  TD    Q+   V+   PE EI+ K
Sbjct: 37  WLNLAIAEKQLGLTQITDEAIEQLKAHVKITAPEFEIAAK 76


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1008

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 15/62 (24%), Positives = 27/62 (43%)
 Frame = +1

Query: 253  KYVRPWRNLAAAARDVGSTIKTDRDKLQINLDVQHFTPEEISVKTADGYIVIEGQHEEKQ 432
            +YVRP     +++  V  T+ TDR    +       +P++  V+     +  EG     +
Sbjct: 878  QYVRPSLTNRSSSPTVTPTVNTDRQPKTLTNSADELSPQKRRVENPKPVVKDEGPVSIVE 937

Query: 433  DE 438
            DE
Sbjct: 938  DE 939


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,119,782
Number of Sequences: 5004
Number of extensions: 57623
Number of successful extensions: 168
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 697499478
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)