Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_G15
         (1305 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical ...    31   1.4  
Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    29   5.5  

>AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical
            protein Y63D3A.5 protein.
          Length = 486

 Score = 31.5 bits (68), Expect = 1.4
 Identities = 13/38 (34%), Positives = 15/38 (39%)
 Frame = +2

Query: 1079 GYXPXSPSGXGAFXYPPVXFXXXXXPPXXGGXKPPXXP 1192
            G+ P  P G GA+  PP  F     PP      P   P
Sbjct: 432  GFGPPPPGGPGAYGPPPTGFPPVGAPPPGAAGAPGGNP 469


>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical protein
            T24B8.4 protein.
          Length = 866

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 14/43 (32%), Positives = 14/43 (32%)
 Frame = +2

Query: 1067 PAXXGYXPXSPSGXGAFXYPPVXFXXXXXPPXXGGXKPPXXPP 1195
            P   G  P  P   G    PP        PP   G  PP  PP
Sbjct: 78   PGPGGIPPPPPMFAGGIPPPPPMMGGIPPPPPMFGAPPPPPPP 120


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,294,372
Number of Sequences: 27780
Number of extensions: 253695
Number of successful extensions: 462
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3642337300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)