Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_G13
         (1385 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    23   8.3  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    23   8.3  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    23   8.3  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    23   8.3  

>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 22.6 bits (46), Expect = 8.3
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 397 GXGGLVXLXALPAXSPRGTRCGSFCFGCPXAVXXVTQRR 513
           G  GL  L  L + +P G+ CG    G   A   +++RR
Sbjct: 136 GLHGLHGLHGLSSSAPTGSSCGP---GAAAAAALLSKRR 171


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 22.6 bits (46), Expect = 8.3
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +2

Query: 869 PXVPXPRXXRXLPPXXGXYRPPSXP 943
           P  P PR    +PP    +RPP  P
Sbjct: 152 PPTPFPRF---IPPNAYRFRPPQNP 173


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 22.6 bits (46), Expect = 8.3
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +2

Query: 869 PXVPXPRXXRXLPPXXGXYRPPSXP 943
           P  P PR    +PP    +RPP  P
Sbjct: 152 PPTPFPRF---IPPNAYRFRPPQNP 173


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 22.6 bits (46), Expect = 8.3
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +2

Query: 869 PXVPXPRXXRXLPPXXGXYRPPSXP 943
           P  P PR    +PP    +RPP  P
Sbjct: 390 PPTPFPRF---IPPNAYRFRPPQNP 411


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,445
Number of Sequences: 438
Number of extensions: 2786
Number of successful extensions: 62
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 48145263
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)