Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_G11
(1410 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 32 0.17
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 31 0.29
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 2.0
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 4.7
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 4.7
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 8.3
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 32.3 bits (70), Expect = 0.17
Identities = 22/79 (27%), Positives = 24/79 (30%)
Frame = -2
Query: 596 LFPSXPPPXXXIXFPXPPP*XXPHXTPSXXXXXXXXHNPTPHPXXXXXDXXEXQXKPPPP 417
L S PPP + P P P P P+ P P P PPPP
Sbjct: 728 LLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMG-----GPPPPPPPPGVAGAGPPPPPPPP 782
Query: 416 PXXSPPXXXTKXPPPLPPP 360
P S P P P
Sbjct: 783 PAVSAGGSRYYAPAPQAEP 801
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 31.5 bits (68), Expect = 0.29
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = -2
Query: 428 PPPPPXXSPPXXXTKXPPPLPPP 360
PPPPP PP PPP PPP
Sbjct: 12 PPPPPGFEPP----SQPPPPPPP 30
Score = 28.3 bits (60), Expect = 2.7
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = -2
Query: 428 PPPPPXXSPPXXXTKXPPPLPPP 360
PPPPP PP PP PPP
Sbjct: 9 PPPPPP--PPGFEPPSQPPPPPP 29
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.7 bits (61), Expect = 2.0
Identities = 20/78 (25%), Positives = 22/78 (28%), Gaps = 1/78 (1%)
Frame = -2
Query: 590 PSXPPPXXXIXFPXPPP*XXPHXTPSXXXXXXXXHNPTPHPXXXXXDXXEXQXKPPPPPX 411
PS PP PP P P P P PPP
Sbjct: 1136 PSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPS 1195
Query: 410 XSPPXXXTKXP-PPLPPP 360
+PP PP+PPP
Sbjct: 1196 EAPPVPKPSVGVPPVPPP 1213
Score = 27.1 bits (57), Expect = 6.3
Identities = 20/80 (25%), Positives = 22/80 (27%), Gaps = 3/80 (3%)
Frame = -2
Query: 590 PSXPPPXXXIXFPXPPP*XXPHXTPSXXXXXXXXHNPTPHPXXXXXDXXEXQXKPPPPPX 411
PS PPP P P P P + K PP P
Sbjct: 967 PSIPPPLPVSNILSSPTSEPPKDHPPSAPLSKPVSTSPAAPLARVPPVPKLSSKAPPVPL 1026
Query: 410 XS---PPXXXTKXPPPLPPP 360
S PP PP+P P
Sbjct: 1027 PSADAPPIPVPSTAPPVPIP 1046
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.5 bits (58), Expect = 4.7
Identities = 15/44 (34%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
Frame = -2
Query: 482 PTPHPXXXXXDXXEXQXKPPPPPXXSPPXXXTKXPP---PLPPP 360
PTP + PPP S P +K PP LPPP
Sbjct: 131 PTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPP 174
Score = 27.5 bits (58), Expect = 4.7
Identities = 21/80 (26%), Positives = 24/80 (30%), Gaps = 3/80 (3%)
Frame = -2
Query: 590 PSXPPPXXXIXFPXP---PP*XXPHXTPSXXXXXXXXHNPTPHPXXXXXDXXEXQXKPPP 420
PS PPP P P PP P P +P P PPP
Sbjct: 147 PSIPPPSPASAPPIPSKAPP--IPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPP 204
Query: 419 PPXXSPPXXXTKXPPPLPPP 360
P +P + P PP
Sbjct: 205 PLSQAPVANTSSRPSSFAPP 224
Score = 26.6 bits (56), Expect = 8.3
Identities = 18/77 (23%), Positives = 21/77 (27%)
Frame = -2
Query: 590 PSXPPPXXXIXFPXPPP*XXPHXTPSXXXXXXXXHNPTPHPXXXXXDXXEXQXKPPPPPX 411
P+ P P + P P PS P P PP
Sbjct: 128 PAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSA 187
Query: 410 XSPPXXXTKXPPPLPPP 360
S P PP +PPP
Sbjct: 188 PSLPSAVPPMPPKVPPP 204
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.5 bits (58), Expect = 4.7
Identities = 18/65 (27%), Positives = 19/65 (29%), Gaps = 2/65 (3%)
Frame = -2
Query: 548 PPP*XXPHXTPSXXXXXXXXHNPTPHPXXXXXDXXEXQXKPPPP--PXXSPPXXXTKXPP 375
P P P P P P P PP P P P + P
Sbjct: 231 PIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKP 290
Query: 374 PLPPP 360
PLPPP
Sbjct: 291 PLPPP 295
Score = 26.6 bits (56), Expect = 8.3
Identities = 25/89 (28%), Positives = 27/89 (30%), Gaps = 6/89 (6%)
Frame = -2
Query: 608 PSXXLFPSXPPPXXXIXFPXPPP*XXPHXTPSXXXXXXXXHNPT-PHPXXXXXDXXEXQX 432
P PS PP P P P PS ++P P
Sbjct: 231 PIPPSIPSSRPPERVPSLSAPAP--PPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTS 288
Query: 431 KPPPPPXXSPPXXXT-----KXPPPLPPP 360
KPP PP S K PPP PPP
Sbjct: 289 KPPLPPPSSRVSAAALAANKKRPPPPPPP 317
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.6 bits (56), Expect = 8.3
Identities = 12/27 (44%), Positives = 12/27 (44%), Gaps = 4/27 (14%)
Frame = -2
Query: 428 PPPPPXXSPPXXXT----KXPPPLPPP 360
PPPPP PP PP PPP
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPP 1733
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,115,200
Number of Sequences: 5004
Number of extensions: 12013
Number of successful extensions: 128
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 782948132
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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