Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_G10
(1333 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 65 2e-11
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch... 53 1e-07
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo... 43 8e-05
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos... 38 0.003
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo... 38 0.004
SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase Ubp11|Schizo... 36 0.017
SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase Ubp4|Schizos... 35 0.022
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 34 0.039
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 33 0.089
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc... 32 0.21
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos... 31 0.47
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa... 29 1.4
SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate syntha... 29 1.9
SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch... 27 7.7
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy... 27 7.7
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 27 7.7
>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 875
Score = 65.3 bits (152), Expect = 2e-11
Identities = 51/183 (27%), Positives = 75/183 (40%)
Frame = +3
Query: 270 CPHVAKAVDLTRLKKAIKIGGFXXXXXXXXXVAKTEVLDPDFEEDLSLWMCXRCGTQLCG 449
C H+ K V L+ LK + + TE + ED L +C CG C
Sbjct: 56 CSHLKKGVKLSHLKGNAR--ALRDPSKHLCFICTTEKIK---REDYELTLCANCGYLFCC 110
Query: 450 RTRNKHALNHFNTPHSDCHGLAANSTTWEIYCYNCNNEVTASTAKKLHECIEYLKKQFLA 629
+ H+ HF C + N T + +CY+C+ ++ K L + +QF+
Sbjct: 111 NHESDHSRKHFEKNKKHC--VFVNIITLKCHCYSCDADIVIFDKKNL---VVRDVQQFIC 165
Query: 630 SSTVKSLPPIELPFETKDFSIIETISKDPLSKGKDKAMVNLGRVRGLXNLGNTCFFNSVM 809
S+ V SL ++ S + K S GK + GL NLG TCFFNS +
Sbjct: 166 SNLVSSLTKAPNVLKSNS-SHFKKEKKSKHSSGKSSKKYKVISP-GLKNLGATCFFNSTL 223
Query: 810 QCL 818
Q L
Sbjct: 224 QVL 226
>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 52.8 bits (121), Expect = 1e-07
Identities = 51/149 (34%), Positives = 70/149 (46%), Gaps = 12/149 (8%)
Frame = +3
Query: 408 SLWMCXRCGTQLCGRTR------NKHALNHF-NTPHSDCHGLAANSTTW--EIYCYNCNN 560
+LWMC CG CGR + N HAL+H+ +T H L + S +IYCY+C+
Sbjct: 182 NLWMCLTCGALSCGRKQYGGGGGNGHALSHYDDTGHPLAVKLKSISPDGQADIYCYSCDE 241
Query: 561 EVTASTAK--KLHECIEYLKKQFLASSTVKSLPPIELPFETK-DFSIIETISKDPLSKGK 731
E K L+ I+ K + T KSL ++L DF E +D S
Sbjct: 242 ERIDPNIKTHMLNFGIDIAK----LNKTEKSLAELQLEQNLNWDFGASE---EDDAS--- 291
Query: 732 DKAMVNLGRVRGLXNLGNTCFFNSVMQCL 818
K + G + GL NLGN+C+ S MQ L
Sbjct: 292 -KRLFGPG-LTGLKNLGNSCYLASTMQSL 318
Score = 27.1 bits (57), Expect = 5.8
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +3
Query: 396 EEDLSLWMCXRCGTQLCGRTRNKHALNHF 482
+E+ + +C C CG T KH+L HF
Sbjct: 33 DEEGGIDLCLTCFQSGCGETGLKHSLVHF 61
>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 457
Score = 43.2 bits (97), Expect = 8e-05
Identities = 23/47 (48%), Positives = 29/47 (61%)
Frame = +3
Query: 708 KDPLSKGKDKAMVNLGRVRGLXNLGNTCFFNSVMQCLVQTPYLLKVL 848
++ LS D M N GL NLGNTCF NSV+Q + QTP L++ L
Sbjct: 110 EEKLSMEWDNIMPN---APGLVNLGNTCFMNSVLQLMTQTPPLVQYL 153
>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 849
Score = 37.9 bits (84), Expect = 0.003
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = +3
Query: 765 GLXNLGNTCFFNSVMQCLVQTPYLLK 842
GL NLGN+C+ NS +QC++ T L K
Sbjct: 280 GLYNLGNSCYMNSALQCMIHTHELTK 305
>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 979
Score = 37.5 bits (83), Expect = 0.004
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +3
Query: 765 GLXNLGNTCFFNSVMQCLVQT 827
GL NLGNTC+ NS +QCL T
Sbjct: 312 GLSNLGNTCYMNSALQCLTHT 332
>SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase
Ubp11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 350
Score = 35.5 bits (78), Expect = 0.017
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = +3
Query: 720 SKGKDKAMVNLGRVRGLXNL-GNTCFFNSVMQCLVQTPYLLKVLQ-RC 857
S K +V ++GL N+ GN CF N V+Q L LL++L+ RC
Sbjct: 35 SPSTGKRLVKNASIKGLYNVSGNDCFLNCVLQSLASQESLLEILKLRC 82
>SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase
Ubp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 35.1 bits (77), Expect = 0.022
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +3
Query: 765 GLXNLGNTCFFNSVMQCL 818
GL NLGNTC+ N V+QCL
Sbjct: 73 GLTNLGNTCYMNCVLQCL 90
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 34.3 bits (75), Expect = 0.039
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +3
Query: 402 DLSLWMCXRCGTQLCGRTRNKHALNHF-NTPHSDCHGLAANSTTWEIYCYNCNNEV 566
D LW+C CG CGR + HA H+ +T H C+ A T ++ Y +N V
Sbjct: 268 DKDLWICLICGNIGCGRYHDAHAKQHYVDTAH--CY--AMELETQRVWDYAGDNYV 319
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 33.1 bits (72), Expect = 0.089
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = +3
Query: 753 GRVRGLXNLGNTCFFNSVMQCLVQTPYL 836
G GL NLGNTC+ NS +Q L P L
Sbjct: 97 GYPSGLINLGNTCYMNSTVQMLRAIPEL 124
>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 31.9 bits (69), Expect = 0.21
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Frame = +3
Query: 762 RGLXNLGNTCFFNSVMQCLVQ-TPY--LLKVLQR 854
RG N GN CF NS++Q L+ P+ LLK + R
Sbjct: 133 RGFINTGNICFMNSILQALMYCVPFYNLLKQINR 166
>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 449
Score = 30.7 bits (66), Expect = 0.47
Identities = 32/139 (23%), Positives = 53/139 (38%), Gaps = 2/139 (1%)
Frame = +3
Query: 420 CXRCGTQLC--GRTRNKHALNHFNTPHSDCHGLAANSTTWEIYCYNCNNEVTASTAKKLH 593
C C + C G +HA+ H H + + YC+ C + V + + L
Sbjct: 51 CLSCHSVGCLWGHHGEEHAMEH-------THMIGVDVKNGHTYCFGCQDYVYQTELETLR 103
Query: 594 ECIEYLKKQFLASSTVKSLPPIELPFETKDFSIIETISKDPLSKGKDKAMVNLGRVRGLX 773
I+ +K S K LP + +E K P + +RG+
Sbjct: 104 FKIKNIKAW---QSDHKRLPE-----KYNQMVCLEAYRKYP-------PVCATAGLRGIQ 148
Query: 774 NLGNTCFFNSVMQCLVQTP 830
NLG TCF + ++Q ++ P
Sbjct: 149 NLGATCFMSVILQSILHNP 167
>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 502
Score = 29.1 bits (62), Expect = 1.4
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Frame = +3
Query: 375 EVLDPDFEE-------DLSLWMCXRCGTQLCGRTRNKHALNHFNTPHSDCHGLAANSTTW 533
++LD DFE+ +LS++ C CG GR + HA H T + H + N +T
Sbjct: 67 KLLDFDFEKVCSVSLTNLSVYACLVCGRYFQGRGPSSHAYFHALTEN---HHVFVNCSTL 123
Query: 534 EIYCYNCNNEVTASTAKKL 590
+ Y + +V +S + +
Sbjct: 124 KFYVLPESYQVESSALQDI 142
>SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate synthase
Arg5 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 415
Score = 28.7 bits (61), Expect = 1.9
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Frame = +3
Query: 384 DPDFEEDLSLW---MCXRCGTQLCGRTRNKHALNHFNTPHSDCHGLAAN 521
DP +++ + ++ + G C + L HF +PH C G+ N
Sbjct: 86 DPSYKQQILIFTQPLIGNYGVPDCKKRDENGLLRHFESPHIQCAGVVVN 134
>SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 425
Score = 26.6 bits (56), Expect = 7.7
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +3
Query: 510 LAANSTTWEIYCYNCNNEVTASTA 581
L + T+ +I C NCN+++T++TA
Sbjct: 241 LDLSKTSSDISCPNCNDQLTSTTA 264
>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 435
Score = 26.6 bits (56), Expect = 7.7
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
Frame = +3
Query: 429 CGTQ---LCGR-TRNKHALNHFNTPHSDCHGL 512
CGT LCG ++ HFN P S C+G+
Sbjct: 388 CGTHFCFLCGAYLMEQNPYKHFNDPVSSCYGM 419
>SPBC3F6.05 |rga1||GTPase activating protein
Rga1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1150
Score = 26.6 bits (56), Expect = 7.7
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +3
Query: 519 NSTTWEIYCYNCNNEVTASTAKKLHECIEYLKK--QFLASSTVKSLPPIELPFETKDFSI 692
N+ T +I CY C E + + + H EY+ + Q++ + + + E D S
Sbjct: 528 NNQTKQIECYLCYTESSNVSNDEPHPSFEYVSRLSQYIYLLRIALVRLYTILMENNDSSQ 587
Query: 693 IETISKDP 716
+ +S DP
Sbjct: 588 RKPLSVDP 595
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,765,292
Number of Sequences: 5004
Number of extensions: 64960
Number of successful extensions: 169
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 731281504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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