Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_G06
         (1315 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog (hed...    30   3.2  
U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin cyt...    29   9.6  
U58751-4|AAN84881.1|  607|Caenorhabditis elegans Wasp (actin cyt...    29   9.6  

>U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 7 protein.
          Length = 401

 Score = 30.3 bits (65), Expect = 3.2
 Identities = 14/43 (32%), Positives = 16/43 (37%)
 Frame = -1

Query: 466 PFPXAEVPXXAXPXGXEPXEXSXXRXPFPXRWPXXXTPPPXPP 338
           P+P   VP  A P    P        P P  +P    P P PP
Sbjct: 71  PYPQHAVPAPAPPLASYPQNAVPVPAPPPAPYPQHAVPAPAPP 113



 Score = 30.3 bits (65), Expect = 3.2
 Identities = 14/45 (31%), Positives = 17/45 (37%)
 Frame = -1

Query: 466 PFPXAEVPXXAXPXGXEPXEXSXXRXPFPXRWPXXXTPPPXPPXP 332
           P+P   VP  A P    P        P+  + P    PP  PP P
Sbjct: 101 PYPQHAVPAPAPPPAPYPQHAVPAPAPYQQQPPPPPPPPHYPPPP 145


>U58751-5|AAN84882.1|  781|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform b
           protein.
          Length = 781

 Score = 28.7 bits (61), Expect = 9.6
 Identities = 16/52 (30%), Positives = 16/52 (30%)
 Frame = -3

Query: 485 PXPXPXPVPXSGGXGXRXPXGXGTXXXLXXPXXXSXAVAGXXXPXPXPPXPP 330
           P P P P P S G     P           P        G   P P PP PP
Sbjct: 609 PPPPPPPPPQSFGMA---PISSAAPPPPPPPPPMGLPAVGAGAPPPPPPPPP 657


>U58751-4|AAN84881.1|  607|Caenorhabditis elegans Wasp (actin
           cytoskeleton modulator)homolog protein 1, isoform a
           protein.
          Length = 607

 Score = 28.7 bits (61), Expect = 9.6
 Identities = 16/52 (30%), Positives = 16/52 (30%)
 Frame = -3

Query: 485 PXPXPXPVPXSGGXGXRXPXGXGTXXXLXXPXXXSXAVAGXXXPXPXPPXPP 330
           P P P P P S G     P           P        G   P P PP PP
Sbjct: 435 PPPPPPPPPQSFGMA---PISSAAPPPPPPPPPMGLPAVGAGAPPPPPPPPP 483


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,706,365
Number of Sequences: 27780
Number of extensions: 195622
Number of successful extensions: 725
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3673557334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)