Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_G01
         (1321 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.9  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   4.4  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   5.8  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 24/112 (21%), Positives = 29/112 (25%), Gaps = 1/112 (0%)
 Frame = +2

Query: 662 PXXPPP*XSXXKXXPXXXXENPXXTIKXXGVPPRXPXXTPXCPXXXGNRKPXXXXPLGXX 841
           P  PPP  +           +          PP  P  +       GN       P+   
Sbjct: 361 PPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTP 420

Query: 842 GXXPXXPPPXXPPPGXKXXPPTXXXG-XKTPPXXPXXXXPXXXKXGXXXPPP 994
              P   PP  PP      PP+   G    PP  P          G    PP
Sbjct: 421 PSLPPSAPPSLPPSA----PPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPP 468



 Score = 27.9 bits (59), Expect = 3.3
 Identities = 18/70 (25%), Positives = 22/70 (31%), Gaps = 1/70 (1%)
 Frame = +2

Query: 788 PXXXGNRKPXXXXPLGXXGXXPXXPPPXXPPPGXKXXP-PTXXXGXKTPPXXPXXXXPXX 964
           P    +R+     P+G        PPP  PP        P    G   PP  P    P  
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPST 372

Query: 965 XKXGXXXPPP 994
            +     PPP
Sbjct: 373 GR----QPPP 378



 Score = 27.1 bits (57), Expect = 5.8
 Identities = 13/49 (26%), Positives = 14/49 (28%)
 Frame = +2

Query: 755 PPRXPXXTPXCPXXXGNRKPXXXXPLGXXGXXPXXPPPXXPPPGXKXXP 901
           PP  P   P  P    +       P G     P  P    PPP     P
Sbjct: 436 PPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAP 484


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 26/125 (20%), Positives = 29/125 (23%)
 Frame = +2

Query: 650  PXXFPXXPPP*XSXXKXXPXXXXENPXXTIKXXGVPPRXPXXTPXCPXXXGNRKPXXXXP 829
            P   P   PP        P      P  + +   +P   P   P  P   G   P    P
Sbjct: 1042 PVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPA--PSGAPPVPAPSGI--PPVPKP 1097

Query: 830  LGXXGXXPXXPPPXXPPPGXKXXPPTXXXGXKTPPXXPXXXXPXXXKXGXXXPPPXXGXF 1009
                   P       P P     PP        PP       P   K     PP      
Sbjct: 1098 SVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSG 1157

Query: 1010 XPXXP 1024
             P  P
Sbjct: 1158 APPVP 1162


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 273

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 19/61 (31%), Positives = 19/61 (31%)
 Frame = -2

Query: 1023 GXXGXXXPXXGGGXXXPFFXXXGXXXXGXXGGVFXPXXXVGGXXFXPGGGXXGGGXXGXX 844
            G  G      GGG   P     G    G  GG        GG    PGG   G G  G  
Sbjct: 184  GHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGG 243

Query: 843  P 841
            P
Sbjct: 244  P 244


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.309    0.143    0.483 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,197,645
Number of Sequences: 5004
Number of extensions: 22839
Number of successful extensions: 46
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 723332792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)