Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP23_F_F23
(1194 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch... 224 2e-59
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces... 118 2e-27
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma... 114 2e-26
SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb... 109 6e-25
SPAC926.03 |rlc1||myosin II regulatory light chain |Schizosaccha... 79 9e-16
SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce... 72 2e-13
SPAC1687.14c |||EF hand family protein, unknown role|Schizosacch... 46 1e-05
SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi... 46 1e-05
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma... 36 0.011
SPBC11G11.02c |end3||actin cortical patch component End3 |Schizo... 36 0.015
SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ... 31 0.32
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p... 29 0.96
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 28 2.2
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 28 2.9
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa... 28 2.9
SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces pom... 27 3.9
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po... 27 5.1
SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyce... 27 5.1
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 27 6.8
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ... 27 6.8
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 27 6.8
>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 150
Score = 224 bits (547), Expect = 2e-59
Identities = 105/145 (72%), Positives = 123/145 (84%)
Frame = +1
Query: 142 LTESQXAEFKEAFSLFDKXGXGTITXKXLGTVMRSLGQNPTEAELQXMINEVDADGNGTI 321
LT+ Q AEF+EAFSLFD+ G IT LG VMRSLGQ+PT AELQ MINEVDADGNGTI
Sbjct: 6 LTDEQIAEFREAFSLFDRDQDGNITSNELGVVMRSLGQSPTAAELQDMINEVDADGNGTI 65
Query: 322 DFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDE 501
DF EFLTMMARKMKDTD+EEE+REAF+VFDKDGNG+I+ EL HV+T+LGE+L+ EEV +
Sbjct: 66 DFTEFLTMMARKMKDTDNEEEVREAFKVFDKDGNGYITVEELTHVLTSLGERLSQEEVAD 125
Query: 502 MIREADIDGDGQVNYEEFVTMMTSK 576
MIREAD DGDG +NYEEF +++SK
Sbjct: 126 MIREADTDGDGVINYEEFSRVISSK 150
>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 118 bits (283), Expect = 2e-27
Identities = 61/144 (42%), Positives = 90/144 (62%)
Frame = +1
Query: 145 TESQXAEFKEAFSLFDKXGXGTITXKXLGTVMRSLGQNPTEAELQXMINEVDADGNGTID 324
++ Q E KEAF L+D G I +G+V+RSLG N T+AEL + NE+ ID
Sbjct: 4 SKEQTDEMKEAFVLYDIDKDGLIPTSHVGSVLRSLGINVTDAELAKLSNEL----GDAID 59
Query: 325 FPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEM 504
+F++ ++ K+++T+SEEE +AFRVFDKD +G+I A+ M LGEKL+D EV M
Sbjct: 60 EKKFMSFVSNKLRETESEEEYIKAFRVFDKDNSGYIETAKFADYMKTLGEKLSDNEVQLM 119
Query: 505 IREADIDGDGQVNYEEFVTMMTSK 576
++EAD G +Y +FV + +K
Sbjct: 120 VQEADPTNSGSFDYYDFVQRIMAK 143
>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 176
Score = 114 bits (275), Expect = 2e-26
Identities = 54/148 (36%), Positives = 84/148 (56%)
Frame = +1
Query: 124 SPMADQLTESQXAEFKEAFSLFDKXGXGTITXKXLGTVMRSLGQNPTEAELQXMINEVDA 303
+P+ ++TE Q + EAF LFD I L MR+LG N ++E+ ++ + D
Sbjct: 25 APLRVEITEEQRQDINEAFKLFDSDKDNAIDYHELRAAMRALGFNAEKSEVLKILRDFDK 84
Query: 304 DGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLT 483
G G + +F+ +M K+ + D EEI+ AF +FD D G IS LR V L E +
Sbjct: 85 TGKGYLQMEDFVRVMTEKIVERDPLEEIKRAFELFDDDETGKISLRNLRRVAKELNENID 144
Query: 484 DEEVDEMIREADIDGDGQVNYEEFVTMM 567
D+E++ MI E D+D DG++N +EF+ +M
Sbjct: 145 DQELEAMIEEFDLDQDGEINEQEFIAIM 172
Score = 52.0 bits (119), Expect = 2e-07
Identities = 26/69 (37%), Positives = 39/69 (56%)
Frame = +1
Query: 370 DSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE 549
+ ++I EAF++FD D + I ELR M LG EV +++R+ D G G + E
Sbjct: 34 EQRQDINEAFKLFDSDKDNAIDYHELRAAMRALGFNAEKSEVLKILRDFDKTGKGYLQME 93
Query: 550 EFVTMMTSK 576
+FV +MT K
Sbjct: 94 DFVRVMTEK 102
>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 141
Score = 109 bits (263), Expect = 6e-25
Identities = 58/136 (42%), Positives = 87/136 (63%), Gaps = 2/136 (1%)
Frame = +1
Query: 166 FKEAFSLFDKXGXGTITXKXLGTVMRSLGQNPTEAELQXMINEVDADGNGTIDFPEFLTM 345
+K+AFSLFD+ G G I +G ++R+ GQNPT AE I E+++ +D +FL +
Sbjct: 8 YKQAFSLFDRHGTGRIPKTSIGDLLRACGQNPTLAE----ITEIESTLPAEVDMEQFLQV 63
Query: 346 MARKMK-DTDSE-EEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREAD 519
+ R D + EE + F+VFDKD G I ELR+V+T+LGEKL++EE+DE+++
Sbjct: 64 LNRPNGFDMPGDPEEFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGVP 123
Query: 520 IDGDGQVNYEEFVTMM 567
+ DG VNY +FV M+
Sbjct: 124 VK-DGMVNYHDFVQMI 138
Score = 35.1 bits (77), Expect = 0.019
Identities = 18/62 (29%), Positives = 33/62 (53%)
Frame = +1
Query: 163 EFKEAFSLFDKXGXGTITXKXLGTVMRSLGQNPTEAELQXMINEVDADGNGTIDFPEFLT 342
EF + F +FDK G I L V+ SLG+ + E+ ++ V +G +++ +F+
Sbjct: 78 EFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGVPVK-DGMVNYHDFVQ 136
Query: 343 MM 348
M+
Sbjct: 137 MI 138
>SPAC926.03 |rlc1||myosin II regulatory light chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 184
Score = 79.4 bits (187), Expect = 9e-16
Identities = 45/140 (32%), Positives = 73/140 (52%)
Frame = +1
Query: 139 QLTESQXAEFKEAFSLFDKXGXGTITXKXLGTVMRSLGQNPTEAELQXMINEVDADGNGT 318
QLT SQ E KEAF+L DK G G I + + T++ SL Q+ +E + M + N
Sbjct: 41 QLTSSQIQELKEAFALLDKDGDGNIGREDVKTMLTSLNQDASEDSINHMFESI----NPP 96
Query: 319 IDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVD 498
I+ FLT M + ++ EAF FD +G I + +R ++++G+++ +EV+
Sbjct: 97 INLAAFLTAMGSMLCRISPRNDLLEAFSTFDDTQSGKIPISTMRDALSSMGDRMDPQEVE 156
Query: 499 EMIREADIDGDGQVNYEEFV 558
++R G YE+FV
Sbjct: 157 SILR--SYTSHGVFYYEKFV 174
Score = 28.3 bits (60), Expect = 2.2
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Frame = +1
Query: 430 ISAAELRHVMTNLGEKLTDEEVDEMIREA----DIDGDGQVNYEEFVTMMTS 573
++A + + +LT ++ E+ +EA D DGDG + E+ TM+TS
Sbjct: 26 VAAQAAKRASSGAFAQLTSSQIQEL-KEAFALLDKDGDGNIGREDVKTMLTS 76
>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 174
Score = 71.7 bits (168), Expect = 2e-13
Identities = 44/142 (30%), Positives = 74/142 (52%), Gaps = 5/142 (3%)
Frame = +1
Query: 145 TESQXAEFKEAFSLFDKXGXGTITXKXLGTVMRSLGQNPTEAELQXMINEVDADGNGTID 324
+ + ++ F D G+I ++ S+ NP + L + VD DG G +D
Sbjct: 19 SNEEIERIRKRFIKIDANQSGSIDRNEFLSIP-SVASNPLASRL---FSVVDEDGGGDVD 74
Query: 325 FPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVM-----TNLGEKLTDE 489
F EF+ ++ + EE+++ AF+++D D +G+IS EL V+ TNL E +
Sbjct: 75 FQEFINSLSVFSVHGNKEEKLKFAFKIYDIDRDGYISNGELYLVLKMMVGTNLREDQLQQ 134
Query: 490 EVDEMIREADIDGDGQVNYEEF 555
VD+ I E D D DG++++EEF
Sbjct: 135 IVDKTIMEVDKDRDGKISFEEF 156
>SPAC1687.14c |||EF hand family protein, unknown
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 76
Score = 46.0 bits (104), Expect = 1e-05
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Frame = +1
Query: 346 MARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADID 525
M+ K + +EE EAF +FD G+I +LR LGE LT E++ M+ D+
Sbjct: 1 MSVSTKRLEMDEEAEEAFDLFDVTHKGYIDFEDLRRSCAQLGENLTKEQLQLML---DLA 57
Query: 526 G-DGQVNYEEFVTM 564
G +G+V+ EEF +
Sbjct: 58 GTNGKVSREEFAEL 71
Score = 34.7 bits (76), Expect = 0.026
Identities = 22/58 (37%), Positives = 30/58 (51%)
Frame = +1
Query: 163 EFKEAFSLFDKXGXGTITXKXLGTVMRSLGQNPTEAELQXMINEVDADGNGTIDFPEF 336
E +EAF LFD G I + L LG+N T+ +LQ M++ A NG + EF
Sbjct: 13 EAEEAFDLFDVTHKGYIDFEDLRRSCAQLGENLTKEQLQLMLDL--AGTNGKVSREEF 68
>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 45.6 bits (103), Expect = 1e-05
Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 12/105 (11%)
Frame = +1
Query: 277 QXMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHV 456
+ + N DAD NG IDF EF+ ++ + + +++ AF+++D D NG IS E+ +
Sbjct: 66 EYVFNVFDADKNGYIDFKEFICALSVTSRG-ELNDKLIWAFQLYDLDNNGLISYDEMLRI 124
Query: 457 ------MTNLGEKLTDEE------VDEMIREADIDGDGQVNYEEF 555
M KL ++E V+++ D + DGQ+ EEF
Sbjct: 125 VDAIYKMVGSMVKLPEDEDTPEKRVNKIFNMMDKNKDGQLTLEEF 169
Score = 31.1 bits (67), Expect = 0.32
Identities = 18/86 (20%), Positives = 39/86 (45%)
Frame = +1
Query: 310 NGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDE 489
+G ++ EF + + D F VFD D NG+I E ++ ++
Sbjct: 40 SGHLNKSEFQKIYKQFFPFGDPSAFAEYVFNVFDADKNGYIDFKEFICALSVTSRGELND 99
Query: 490 EVDEMIREADIDGDGQVNYEEFVTMM 567
++ + D+D +G ++Y+E + ++
Sbjct: 100 KLIWAFQLYDLDNNGLISYDEMLRIV 125
>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 614
Score = 35.9 bits (79), Expect = 0.011
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Frame = +1
Query: 346 MARKMKDTDSEE--EIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREAD 519
+ +K + +EE + + F D DG G++ + +K + +EV E IRE +
Sbjct: 6 LQKKYPELTNEEILTLTDQFNKLDVDGKGYLDQPTTIKAFED-SKKGSYDEVREAIREVN 64
Query: 520 IDGDGQVNYEEFV 558
+D G+V E+FV
Sbjct: 65 VDSSGRVEPEDFV 77
Score = 33.9 bits (74), Expect = 0.045
Identities = 21/74 (28%), Positives = 35/74 (47%)
Frame = +1
Query: 274 LQXMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRH 453
L N++D DG G +D P T+ A + S +E+REA R + D +G + +
Sbjct: 21 LTDQFNKLDVDGKGYLDQP--TTIKAFEDSKKGSYDEVREAIREVNVDSSGRVEPEDFVG 78
Query: 454 VMTNLGEKLTDEEV 495
+ L + + EV
Sbjct: 79 IFNVLKKGVEGTEV 92
>SPBC11G11.02c |end3||actin cortical patch component End3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 375
Score = 35.5 bits (78), Expect = 0.015
Identities = 19/68 (27%), Positives = 39/68 (57%)
Frame = +1
Query: 364 DTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVN 543
D + + E FR + + NG++S ++ V+ + KL+ ++++++ ADID DG +
Sbjct: 2 DPQEKNKYWEIFRGLNPE-NGYLSGSKAAGVLRS--SKLSSDKLEKIWDLADIDDDGMFD 58
Query: 544 YEEFVTMM 567
++EF M
Sbjct: 59 FDEFAIAM 66
>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 557
Score = 31.1 bits (67), Expect = 0.32
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = -1
Query: 531 VAVDIGLANHLVDLLVSEFLSEVGHDVAQLGRGDEAVAVLVEDAE 397
V++ I L ++ L+ FLSE + +G+ DEA+ V+ ++AE
Sbjct: 180 VSIGINLLWGIITLVGVSFLSESPRYLVSIGKDDEAIQVMCKNAE 224
>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 531
Score = 29.5 bits (63), Expect = 0.96
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = -1
Query: 531 VAVDIGLANHLVDLLVSEFLSEVGHDVAQLGRGDEAVAVLVEDAEGLAD 385
V++ I L ++ ++ FL E + Q+G+ +EAV VL E AE D
Sbjct: 184 VSIGINLLWGIITMIGILFLPESPRYLIQVGKDEEAVRVLSESAELFPD 232
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 28.3 bits (60), Expect = 2.2
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +1
Query: 286 INEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDK 414
I+E D + NG + F + + +KD+ EE+ ++F + D+
Sbjct: 545 ISESDDESNGDMIRDSFDRLSSESIKDSQKTEELHDSFGINDE 587
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 27.9 bits (59), Expect = 2.9
Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Frame = +1
Query: 163 EFKEAFSLFDKXGXGTITXKXLGTVMRSLGQ-NPTEAELQXMINEVDADGNGTIDFPEFL 339
+FK+ L T + GT+ S+G + E + ++++ T DFPE L
Sbjct: 530 DFKDKVFLAGIKRWPTTSLHPFGTLYESIGTIGDPKVEYKAILHDFSCH---TYDFPESL 586
Query: 340 TMMARKMKDTDSEEEIREAFRVFDK 414
+ +++ EE+++ + + DK
Sbjct: 587 SHCVKRLPTPIPAEELQKRYNLRDK 611
>SPBC418.02 |||NatA N-acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 27.9 bits (59), Expect = 2.9
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -1
Query: 663 SNTMLILCVMKQNVYLNSLLFTHTLAGGSLRRHHGDE 553
S T+L + +M QN +LN+ F H A + R+ + +E
Sbjct: 199 SQTVLEILLMNQNSFLNNFNFEHIKADFAFRQKNYEE 235
>SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 409
Score = 27.5 bits (58), Expect = 3.9
Identities = 18/81 (22%), Positives = 34/81 (41%)
Frame = +1
Query: 268 AELQXMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAEL 447
A ++ V + N ID E + K+ + ++ E V +DG+ I+ E
Sbjct: 318 ARYNELVQAVSSSSNSEIDEVEDAETIDSKILEKRNDLNNEEPNSVVAEDGSEIITLDEN 377
Query: 448 RHVMTNLGEKLTDEEVDEMIR 510
EKL D +++E ++
Sbjct: 378 DQSPNEATEKLRDNDLEESLK 398
>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 27.1 bits (57), Expect = 5.1
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 454 VMTNLGEKLTDEEVDEMIREADIDGDGQVNYEE 552
V + E+ +EE DEM E D +G+G EE
Sbjct: 170 VQPDADEEEEEEEADEMEEEFDEEGEGDEEEEE 202
>SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 210
Score = 27.1 bits (57), Expect = 5.1
Identities = 17/59 (28%), Positives = 31/59 (52%)
Frame = +1
Query: 349 ARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADID 525
AR++K I + ++ D+ + +A EL V LG+ +TD VDE +A+++
Sbjct: 113 ARQLKSQSKNVSIEKIEKLQDEIQDYMDAAGELNEV---LGQNMTDINVDEEELDAELE 168
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 26.6 bits (56), Expect = 6.8
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 8/46 (17%)
Frame = +1
Query: 406 FDKDGNGFISAAELRH--------VMTNLGEKLTDEEVDEMIREAD 519
FD D NG ++ + L +TN +L+ EE+D M+ EA+
Sbjct: 476 FDVDANGILNVSALEKGTGKTQKITITNDKGRLSKEEIDRMVSEAE 521
>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 359
Score = 26.6 bits (56), Expect = 6.8
Identities = 17/72 (23%), Positives = 29/72 (40%)
Frame = -1
Query: 621 YLNSLLFTHTLAGGSLRRHHGDELFVIDLAVAVDIGLANHLVDLLVSEFLSEVGHDVAQL 442
Y L T+ G + E+ I+ V DIG + + +F + D +L
Sbjct: 172 YCKRLAPTYETLGKVFKNEPNVEIVKINADVFADIGRLHEVASFPTIKFFPKDDKDKPEL 231
Query: 441 GRGDEAVAVLVE 406
GD ++ L+E
Sbjct: 232 YEGDRSLESLIE 243
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 26.6 bits (56), Expect = 6.8
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 8/46 (17%)
Frame = +1
Query: 406 FDKDGNGFISAAELRH--------VMTNLGEKLTDEEVDEMIREAD 519
FD D NG ++ + L +TN +L+ EE+D M+ EA+
Sbjct: 476 FDVDANGILNVSALEKGTGKTQKITITNDKGRLSKEEIDRMVAEAE 521
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,777,799
Number of Sequences: 5004
Number of extensions: 42776
Number of successful extensions: 165
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 643474786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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