Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP23_F_F21
         (1249 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    31   0.25 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   3.1  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   3.1  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 31.5 bits (68), Expect = 0.25
 Identities = 20/70 (28%), Positives = 20/70 (28%), Gaps = 2/70 (2%)
 Frame = +3

Query: 543  PPXRXGXPPPEXTPXXXGGXEXXXPGXXTPPXPXXGAGXXXXPP--TTXPAXXXXXGXXP 716
            P    G PP    P    G     P    PP P    G    PP  T  P      G  P
Sbjct: 1172 PAPSSGIPP---VPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPP 1228

Query: 717  XPXAXGXXPP 746
             P      PP
Sbjct: 1229 VPVPTAKAPP 1238


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 24/105 (22%), Positives = 25/105 (23%), Gaps = 3/105 (2%)
 Frame = +2

Query: 527 PQXXPPPXEGGGXXPGKXPPXKXGPRKXXP---XXXXPXXPPXGGRXGXXTPNXRAXXXX 697
           P   PPP  G    P   PP    P    P       P  PP   R         A    
Sbjct: 253 PPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAA--LAANKKR 310

Query: 698 XXGPXPPXXGXGXRAPXXGGXXXXXXKKXXRPPXXXXXXXXXXPP 832
              P PP      + P   G           PP          PP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPP 355


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 15/49 (30%), Positives = 15/49 (30%)
 Frame = +3

Query: 540 PPPXRXGXPPPEXTPXXXGGXEXXXPGXXTPPXPXXGAGXXXXPPTTXP 686
           PPP     P P   P           G   PP P   AG    PP   P
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.145    0.483 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,789,486
Number of Sequences: 5004
Number of extensions: 18075
Number of successful extensions: 31
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 679334062
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)